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The map label for this gene is Psd

Identifier: 20093602

GI number: 20093602

Start: 161509

End: 162153

Strand: Reverse

Name: Psd

Synonym: MK0162

Alternate gene names: 20093602

Gene position: 162153-161509 (Counterclockwise)

Preceding gene: 20093603

Following gene: 20093601

Centisome position: 9.57

GC content: 62.17

Gene sequence:

>645_bases
TTGATGGCGCCTGGATGGTGGAAGTTCGTAACACCACCGGCGGCCCTCGGCGCAGCACTGTTCCCATGGTCTCGCCCCTT
ATCCTTCCTCTGCCTCGGAACCGCGGCGTTCCTGGCGTTCTTCTTCCGTAACCCTCCGCGTGAACCTCCTTCGGACCCTT
CCCTCGCGGTATCACCCGCGGACGGTAGACTGCTGGGTTACGTGATGGAAGCCGGGGAGGCATCCGACGACGAGTTGAGC
TCGTACCTAGACGACCCGATAACGGTGTCCGTGTTCATGTCGCCGCTCGACGTGCACGTGAACCGCGCCCCGCTGGACGG
GCGGGTCGTGGAGGCCGAGATTTTAAAAGGACGGTTCCGTCCGGCTTTCCGGAAAGATTCGGCCACCGAGAACAACCGGG
CGGTGTTGCTGTTCGACGGCGACCCCCCGTTCGTCGTCCGTTTAGTATCGGGAGCGGTCGCGCGCAGGATCGACCTGTAC
GTACAGGAGGGAGACGAGGTGAACAAGGGGGAACCGATCGGCATGATCCGATTCGGGTCAAGGGTCGACCTGGCTGTCCC
CCGAAGTAGCGTGGAGGAGCTACTCGTACGTAAAGGGGACAGTGTAAAGGCCGGCGAGACTCCCGTGATTAGGGTGAAGA
GGTGA

Upstream 100 bases:

>100_bases
TACTCCATCACGAGGTTCCACTCCGCGTGCTGGAAAAGTACCTGAAGTGGGTACACATCGTCCCCGGGTTCGTGTTCGTC
TGTGAGCGGGTGTGAGCGAT

Downstream 100 bases:

>100_bases
GGTAACGTGGAGCGTTGGAAGATCTCGGAGCTGATCACACCCGCGTGCGTGGTATCGCTGACCAACGTGGTCTTCGGAGC
GTTTTCACTTCTAGCGTCGA

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MMAPGWWKFVTPPAALGAALFPWSRPLSFLCLGTAAFLAFFFRNPPREPPSDPSLAVSPADGRLLGYVMEAGEASDDELS
SYLDDPITVSVFMSPLDVHVNRAPLDGRVVEAEILKGRFRPAFRKDSATENNRAVLLFDGDPPFVVRLVSGAVARRIDLY
VQEGDEVNKGEPIGMIRFGSRVDLAVPRSSVEELLVRKGDSVKAGETPVIRVKR

Sequences:

>Translated_214_residues
MMAPGWWKFVTPPAALGAALFPWSRPLSFLCLGTAAFLAFFFRNPPREPPSDPSLAVSPADGRLLGYVMEAGEASDDELS
SYLDDPITVSVFMSPLDVHVNRAPLDGRVVEAEILKGRFRPAFRKDSATENNRAVLLFDGDPPFVVRLVSGAVARRIDLY
VQEGDEVNKGEPIGMIRFGSRVDLAVPRSSVEELLVRKGDSVKAGETPVIRVKR
>Mature_214_residues
MMAPGWWKFVTPPAALGAALFPWSRPLSFLCLGTAAFLAFFFRNPPREPPSDPSLAVSPADGRLLGYVMEAGEASDDELS
SYLDDPITVSVFMSPLDVHVNRAPLDGRVVEAEILKGRFRPAFRKDSATENNRAVLLFDGDPPFVVRLVSGAVARRIDLY
VQEGDEVNKGEPIGMIRFGSRVDLAVPRSSVEELLVRKGDSVKAGETPVIRVKR

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_METKA (Q8TYX9)

Other databases:

- EMBL:   AE009439
- RefSeq:   NP_613449.1
- GeneID:   1477465
- GenomeReviews:   AE009439_GR
- KEGG:   mka:MK0162
- NMPDR:   fig|190192.1.peg.162
- HOGENOM:   HBG541103
- OMA:   ESENNER
- ProtClustDB:   PRK05305
- BioCyc:   MKAN190192:MK0162-MONOMER
- BRENDA:   4.1.1.65
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 23426; Mature: 23426

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMAPGWWKFVTPPAALGAALFPWSRPLSFLCLGTAAFLAFFFRNPPREPPSDPSLAVSPA
CCCCCCCEECCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC
DGRLLGYVMEAGEASDDELSSYLDDPITVSVFMSPLDVHVNRAPLDGRVVEAEILKGRFR
CCCEEEEEECCCCCCHHHHHHHCCCCEEEEEEECCCEEEEECCCCCCEEEHHHHHHCCCC
PAFRKDSATENNRAVLLFDGDPPFVVRLVSGAVARRIDLYVQEGDEVNKGEPIGMIRFGS
CCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCCEEEEEECC
RVDLAVPRSSVEELLVRKGDSVKAGETPVIRVKR
EEEEECCHHHHHHHHHHCCCCCCCCCCCEEEEEC
>Mature Secondary Structure
MMAPGWWKFVTPPAALGAALFPWSRPLSFLCLGTAAFLAFFFRNPPREPPSDPSLAVSPA
CCCCCCCEECCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC
DGRLLGYVMEAGEASDDELSSYLDDPITVSVFMSPLDVHVNRAPLDGRVVEAEILKGRFR
CCCEEEEEECCCCCCHHHHHHHCCCCEEEEEEECCCEEEEECCCCCCEEEHHHHHHCCCC
PAFRKDSATENNRAVLLFDGDPPFVVRLVSGAVARRIDLYVQEGDEVNKGEPIGMIRFGS
CCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCCEEEEEECC
RVDLAVPRSSVEELLVRKGDSVKAGETPVIRVKR
EEEEECCHHHHHHHHHHCCCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11930014