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The map label for this gene is 20093528

Identifier: 20093528

GI number: 20093528

Start: 80293

End: 82308

Strand: Reverse

Name: 20093528

Synonym: MK0088

Alternate gene names: NA

Gene position: 82308-80293 (Counterclockwise)

Preceding gene: 20093529

Following gene: 20093514

Centisome position: 4.86

GC content: 61.06

Gene sequence:

>2016_bases
CTGAAGGCGTGGTCCAAGGAGGCGATGACATCCTTCGACGTACGCGCCACGGCCCGCGAACTAGATTCCTTGCTCGAGGG
GGCCTTGATAGACAAGATATACCAGGTAGGAGAGCGCGAGCTGAAGGTCAAGGTTCACGTCCCGGGCGTGGGCTCCCATT
ATCTGGTCTGGGAACCGGGGATGCGTGTACACCTAACCTGGCGCCCAAAACCCAGCCCCGACCAACCCACCTCCGTTTCC
CAGGCCCTCCGAAACACCCTTTCCGGCGACCGCATCGAGCGCGTCACCCAGCTAGGTTTCGATAGAATCCTACGCTTCGA
CCTGCGTTCGGGCCGTAGGGTCCATGTCGAGCTGCTCCCCAAAGGTACGCTCGCCGTAACGGACGAGAACAACGTCATTG
AGCGGGCTTTTCCGGCCAGACGGTTCCGTAACAGGGCCGTCGTGCCCGGTGAAGTGTACGAGCCACCCGAAGGCCCGCCC
GATCCTTACGAGCTCGACCGTGACGCCTTCCTGGAACTACTACTCGAGGCCGACCGCGATCTCGTCCGGACGCTCGCCGT
AGACGTGGGTCTCGGGGGCCTCTACGCCGAAGAGGTGCTCCTGAGGGCCGGGCTGTACGAGCGTCGGGAGTCCCACGCAT
CCGAGTTCGAGGAGGATGAGCTAGAGGAGCTCTACGAAACGCTCCGGGACCTCCTAGAGCAGATATCCGAGGGAGATCTA
CGGCCCACACTCTATAGGACGACCGAGCGAGATTACGTGGACGTCACGCCGGTGCCGCTCGAACGCTACTCCGATGAGCT
CGAGATGGAGGAGCAGGACACCTTCCAGCGTGCCTTAGACGAGTATTACGTGACGAAGTTCCTGGCGGAGAAGGAACGCG
AAGTGCGGGAGGAATGGGAGCGTGAGAAACGTCGCCTCGAGCGGACGATCGAGAGGCAGCGCTCGAGCATCGAGCAGCTA
CGTACAAAGGCGGAGAAACTCCGTGGGCGGGCCAACGCGCTGTACCTGAACTACAACCTCGTCGACGGGATCCTGAGCGA
GCTCCGGAAGGCAGAACGCAAGGGGTACTCGCTGGACGAGATCAAGCGGAGGATCCAAGAGGCTAAGGGTTCCGGCATCG
AGGAAGTGGAGAGGATAGCCGACATCGACGTTGAGAACCGTCGCGTGATCCTCAGGTTGCCGGGTGAGAACGGCGAGGTA
ACCGTGCCCGTACCGATCGACTCGGACGTTCACTCCACGGCTTCCAAGCTTTTCGATCGTGCGAAGGAGCTAGAACGTAA
GGCCGAGCGCGCTCAGGAGGTTCTTCGAGAGCAGGAGCGCGAACTCGAGAAGCTACTCGAAGAGGGCCCACCCGAGGTGG
AGCTCGAGGAACTGACCGTCGAGCTCACGAAGCGTCGCAAGAAGGACTGGTACGAGCGGTTCAGGTGGTTCATCTCTTCC
GACGGTTTCGTAGTCATAGGCGGCTCGGACGCTCATACCAACGAGATCATACTGCGGCGCTACCTGGAGGAGCACGACAT
CCTCGTCCACGCTCACGTGCACGGAGCTCCACATGTCGTGATCAAGACTGAGGGCGAGGAGGTCCCGGAGACGACCCTAC
GCGAGGCGGCGATCTTCGCGGCTTCGTATTCCCGAGCGTGGCGTTGGGGCCTTAAAGCCGCTGATGTTTACTGGGTGACG
GCCGATCAGGTAGACAAGTCCGCCGAGGCCCCCCACGGAGGTGCTATCATCCGCGGTAAACGTAACTGGTTCCGTCGAAC
GGAGCTGAAGGTGGCAATCGGTGTCCAAGAGGTGGAGGGTGGGTACAGGGTAATGGGCGGACCAGTCTCCGCCGTGAAGA
AACACTGCATGACGTACGGCGTCTTGGAGCCTGGAAACGAGCGCAAATCCGACGTCGCCAGGAGGCTCTTCGAGCTGTTC
AAGAAGGAGGTGGAGAACCTACGCCGTTATCTGACTGTAGACGACGTGATGAGGGCTATGCCGCCCGGAAACGCGAGGCT
GTTGGAGGTAGGCTGA

Upstream 100 bases:

>100_bases
AGGAGAAGGAGGAGACAGTCCGGAGGAAGGAGGCCGTCAAGGCGAAGATCAAGAGAAGGACCGCGTGATCCGACGGTGAT
CCCACCGGGGGTCACACGGC

Downstream 100 bases:

>100_bases
CTCACCTGGCCTCGAGGGACCAACGGCCGCCATCGTGCCGTGCGATCACCGAGCAAACGTAGTGCTCGAAGGACGGTACC
GGATCGCACTCCAGCGGGTC

Product: RNA-binding protein snRNP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 671; Mature: 671

Protein sequence:

>671_residues
MKAWSKEAMTSFDVRATARELDSLLEGALIDKIYQVGERELKVKVHVPGVGSHYLVWEPGMRVHLTWRPKPSPDQPTSVS
QALRNTLSGDRIERVTQLGFDRILRFDLRSGRRVHVELLPKGTLAVTDENNVIERAFPARRFRNRAVVPGEVYEPPEGPP
DPYELDRDAFLELLLEADRDLVRTLAVDVGLGGLYAEEVLLRAGLYERRESHASEFEEDELEELYETLRDLLEQISEGDL
RPTLYRTTERDYVDVTPVPLERYSDELEMEEQDTFQRALDEYYVTKFLAEKEREVREEWEREKRRLERTIERQRSSIEQL
RTKAEKLRGRANALYLNYNLVDGILSELRKAERKGYSLDEIKRRIQEAKGSGIEEVERIADIDVENRRVILRLPGENGEV
TVPVPIDSDVHSTASKLFDRAKELERKAERAQEVLREQERELEKLLEEGPPEVELEELTVELTKRRKKDWYERFRWFISS
DGFVVIGGSDAHTNEIILRRYLEEHDILVHAHVHGAPHVVIKTEGEEVPETTLREAAIFAASYSRAWRWGLKAADVYWVT
ADQVDKSAEAPHGGAIIRGKRNWFRRTELKVAIGVQEVEGGYRVMGGPVSAVKKHCMTYGVLEPGNERKSDVARRLFELF
KKEVENLRRYLTVDDVMRAMPPGNARLLEVG

Sequences:

>Translated_671_residues
MKAWSKEAMTSFDVRATARELDSLLEGALIDKIYQVGERELKVKVHVPGVGSHYLVWEPGMRVHLTWRPKPSPDQPTSVS
QALRNTLSGDRIERVTQLGFDRILRFDLRSGRRVHVELLPKGTLAVTDENNVIERAFPARRFRNRAVVPGEVYEPPEGPP
DPYELDRDAFLELLLEADRDLVRTLAVDVGLGGLYAEEVLLRAGLYERRESHASEFEEDELEELYETLRDLLEQISEGDL
RPTLYRTTERDYVDVTPVPLERYSDELEMEEQDTFQRALDEYYVTKFLAEKEREVREEWEREKRRLERTIERQRSSIEQL
RTKAEKLRGRANALYLNYNLVDGILSELRKAERKGYSLDEIKRRIQEAKGSGIEEVERIADIDVENRRVILRLPGENGEV
TVPVPIDSDVHSTASKLFDRAKELERKAERAQEVLREQERELEKLLEEGPPEVELEELTVELTKRRKKDWYERFRWFISS
DGFVVIGGSDAHTNEIILRRYLEEHDILVHAHVHGAPHVVIKTEGEEVPETTLREAAIFAASYSRAWRWGLKAADVYWVT
ADQVDKSAEAPHGGAIIRGKRNWFRRTELKVAIGVQEVEGGYRVMGGPVSAVKKHCMTYGVLEPGNERKSDVARRLFELF
KKEVENLRRYLTVDDVMRAMPPGNARLLEVG
>Mature_671_residues
MKAWSKEAMTSFDVRATARELDSLLEGALIDKIYQVGERELKVKVHVPGVGSHYLVWEPGMRVHLTWRPKPSPDQPTSVS
QALRNTLSGDRIERVTQLGFDRILRFDLRSGRRVHVELLPKGTLAVTDENNVIERAFPARRFRNRAVVPGEVYEPPEGPP
DPYELDRDAFLELLLEADRDLVRTLAVDVGLGGLYAEEVLLRAGLYERRESHASEFEEDELEELYETLRDLLEQISEGDL
RPTLYRTTERDYVDVTPVPLERYSDELEMEEQDTFQRALDEYYVTKFLAEKEREVREEWEREKRRLERTIERQRSSIEQL
RTKAEKLRGRANALYLNYNLVDGILSELRKAERKGYSLDEIKRRIQEAKGSGIEEVERIADIDVENRRVILRLPGENGEV
TVPVPIDSDVHSTASKLFDRAKELERKAERAQEVLREQERELEKLLEEGPPEVELEELTVELTKRRKKDWYERFRWFISS
DGFVVIGGSDAHTNEIILRRYLEEHDILVHAHVHGAPHVVIKTEGEEVPETTLREAAIFAASYSRAWRWGLKAADVYWVT
ADQVDKSAEAPHGGAIIRGKRNWFRRTELKVAIGVQEVEGGYRVMGGPVSAVKKHCMTYGVLEPGNERKSDVARRLFELF
KKEVENLRRYLTVDDVMRAMPPGNARLLEVG

Specific function: Unknown

COG id: COG1293

COG function: function code K; Predicted RNA-binding protein homologous to eukaryotic snRNP

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI32130516, Length=667, Percent_Identity=24.8875562218891, Blast_Score=157, Evalue=3e-38,
Organism=Caenorhabditis elegans, GI32565397, Length=642, Percent_Identity=27.2585669781931, Blast_Score=206, Evalue=3e-53,
Organism=Saccharomyces cerevisiae, GI6325248, Length=171, Percent_Identity=26.9005847953216, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI281362530, Length=667, Percent_Identity=26.9865067466267, Blast_Score=180, Evalue=4e-45,
Organism=Drosophila melanogaster, GI281362528, Length=667, Percent_Identity=26.9865067466267, Blast_Score=180, Evalue=4e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008532
- InterPro:   IPR008616
- InterPro:   IPR010979 [H]

Pfam domain/function: PF05670 DUF814; PF05833 FbpA [H]

EC number: NA

Molecular weight: Translated: 77556; Mature: 77556

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAWSKEAMTSFDVRATARELDSLLEGALIDKIYQVGERELKVKVHVPGVGSHYLVWEPG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEECCC
MRVHLTWRPKPSPDQPTSVSQALRNTLSGDRIERVTQLGFDRILRFDLRSGRRVHVELLP
CEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
KGTLAVTDENNVIERAFPARRFRNRAVVPGEVYEPPEGPPDPYELDRDAFLELLLEADRD
CCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
LVRTLAVDVGLGGLYAEEVLLRAGLYERRESHASEFEEDELEELYETLRDLLEQISEGDL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
RPTLYRTTERDYVDVTPVPLERYSDELEMEEQDTFQRALDEYYVTKFLAEKEREVREEWE
CCCEEECCCCCEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REKRRLERTIERQRSSIEQLRTKAEKLRGRANALYLNYNLVDGILSELRKAERKGYSLDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCHHH
IKRRIQEAKGSGIEEVERIADIDVENRRVILRLPGENGEVTVPVPIDSDVHSTASKLFDR
HHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHH
AKELERKAERAQEVLREQERELEKLLEEGPPEVELEELTVELTKRRKKDWYERFRWFISS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
DGFVVIGGSDAHTNEIILRRYLEEHDILVHAHVHGAPHVVIKTEGEEVPETTLREAAIFA
CCEEEECCCCCCHHHHHHHHHHHHCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHH
ASYSRAWRWGLKAADVYWVTADQVDKSAEAPHGGAIIRGKRNWFRRTELKVAIGVQEVEG
HHHHHHHHCCCCCCEEEEEEHHHHCCCCCCCCCCEEEECCHHHHHHHHEEEEEEHHHHCC
GYRVMGGPVSAVKKHCMTYGVLEPGNERKSDVARRLFELFKKEVENLRRYLTVDDVMRAM
CEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC
PPGNARLLEVG
CCCCCEEEECC
>Mature Secondary Structure
MKAWSKEAMTSFDVRATARELDSLLEGALIDKIYQVGERELKVKVHVPGVGSHYLVWEPG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEECCC
MRVHLTWRPKPSPDQPTSVSQALRNTLSGDRIERVTQLGFDRILRFDLRSGRRVHVELLP
CEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
KGTLAVTDENNVIERAFPARRFRNRAVVPGEVYEPPEGPPDPYELDRDAFLELLLEADRD
CCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
LVRTLAVDVGLGGLYAEEVLLRAGLYERRESHASEFEEDELEELYETLRDLLEQISEGDL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
RPTLYRTTERDYVDVTPVPLERYSDELEMEEQDTFQRALDEYYVTKFLAEKEREVREEWE
CCCEEECCCCCEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REKRRLERTIERQRSSIEQLRTKAEKLRGRANALYLNYNLVDGILSELRKAERKGYSLDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCHHH
IKRRIQEAKGSGIEEVERIADIDVENRRVILRLPGENGEVTVPVPIDSDVHSTASKLFDR
HHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHH
AKELERKAERAQEVLREQERELEKLLEEGPPEVELEELTVELTKRRKKDWYERFRWFISS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
DGFVVIGGSDAHTNEIILRRYLEEHDILVHAHVHGAPHVVIKTEGEEVPETTLREAAIFA
CCEEEECCCCCCHHHHHHHHHHHHCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHH
ASYSRAWRWGLKAADVYWVTADQVDKSAEAPHGGAIIRGKRNWFRRTELKVAIGVQEVEG
HHHHHHHHCCCCCCEEEEEEHHHHCCCCCCCCCCEEEECCHHHHHHHHEEEEEEHHHHCC
GYRVMGGPVSAVKKHCMTYGVLEPGNERKSDVARRLFELFKKEVENLRRYLTVDDVMRAM
CEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC
PPGNARLLEVG
CCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]