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The map label for this gene is ygzD [H]

Identifier: 19746847

GI number: 19746847

Start: 1666129

End: 1666335

Strand: Reverse

Name: ygzD [H]

Synonym: spyM18_2001

Alternate gene names: 19746847

Gene position: 1666335-1666129 (Counterclockwise)

Preceding gene: 19746848

Following gene: 161484697

Centisome position: 87.93

GC content: 41.55

Gene sequence:

>207_bases
ATGAAAAACCTCAAATTAAAAGCAGCGCGTGCAGGCAAAGATTTGTCTCAACAAGCTTTAGCAGATTTGGTAGGCGTCTC
CAGACAAACCATTGCGGCTGTTGAAAAAGGTGATTACAACCCAACGATTAATCTTTGCATTGCCATTTGTCGAGTGCTTG
ATAAGACCTTAGACGACCTTTTTTGGGAAGCTGATGATTCTCGTTAA

Upstream 100 bases:

>100_bases
CTGGCGGCAGTGGATCTTTAATGGTGTTGGGCATAACGCTCCTTAGTATGGGAGCTAGTATTTTCTATCGTCATTATCTG
GATGCTAAAGAGGCAGATGA

Downstream 100 bases:

>100_bases
CATCAGCAGAGCAGCTCTGCCATTCTCCTAAATCTAAAGAAAAAATAATCCAATAAAATTAGCTAAAGCACTTGACTGGA
GCCTCTTAAGTTTGATATCA

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 68

Protein sequence:

>68_residues
MKNLKLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLFWEADDSR

Sequences:

>Translated_68_residues
MKNLKLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLFWEADDSR
>Mature_68_residues
MKNLKLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLFWEADDSR

Specific function: Unknown

COG id: COG1476

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 7492; Mature: 7492

Theoretical pI: Translated: 6.48; Mature: 6.48

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNLKLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDL
CCCCCCCHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
FWEADDSR
HHCCCCCC
>Mature Secondary Structure
MKNLKLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDL
CCCCCCCHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
FWEADDSR
HHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]