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The map label for this gene is glnR [H]

Identifier: 19746805

GI number: 19746805

Start: 1615123

End: 1615494

Strand: Reverse

Name: glnR [H]

Synonym: spyM18_1943

Alternate gene names: 19746805

Gene position: 1615494-1615123 (Counterclockwise)

Preceding gene: 19746806

Following gene: 19746804

Centisome position: 85.25

GC content: 37.37

Gene sequence:

>372_bases
ATGAAAGAAAAAGAACTTAGACGCTCAATGGCTGTTTTTCCTATTGGAACGGTGATGACATTAACAGATCTCTCTGCGAG
ACAAATTCGCTATTATGAAGATCAAGGTTTAATTAAGCCTGAACGAACGCAAGGGAATCGGCGTATGTTTTCCTTAAATG
ACATGGACCGACTTTTGGAAATTAAAGATTTTTTGTCTGAGGGATTAAATATTGCAGCTATTAAACGCGAATATGTCGAG
CGTCAAGGTAAGTTAATGCAAAAACAAAAAGCTCTAACAGATGCAGATGTCAGACGGATCTTACATGATGAAATGCTGAC
ACAAAGCGGTTTTTCTACTCCCTCACAGCATATTGGTAATTTTCGTATTTAA

Upstream 100 bases:

>100_bases
ATGGTTTAACAAAAAACACAGTGATGTTAGATAATATAACATATATACTTGACAGGTTATTTTTTTCAGCCTATAATAAG
GAAGATGAAAGGAGTTTGTC

Downstream 100 bases:

>100_bases
GATATGAATTGTATAAAATTTAAAGGAGACCTATTTAATGGCAATAACAGTAGCTGACATTCGTCGTGAAGTCAAAGAAA
AAAATGTAACGTTTCTTCGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MKEKELRRSMAVFPIGTVMTLTDLSARQIRYYEDQGLIKPERTQGNRRMFSLNDMDRLLEIKDFLSEGLNIAAIKREYVE
RQGKLMQKQKALTDADVRRILHDEMLTQSGFSTPSQHIGNFRI

Sequences:

>Translated_123_residues
MKEKELRRSMAVFPIGTVMTLTDLSARQIRYYEDQGLIKPERTQGNRRMFSLNDMDRLLEIKDFLSEGLNIAAIKREYVE
RQGKLMQKQKALTDADVRRILHDEMLTQSGFSTPSQHIGNFRI
>Mature_123_residues
MKEKELRRSMAVFPIGTVMTLTDLSARQIRYYEDQGLIKPERTQGNRRMFSLNDMDRLLEIKDFLSEGLNIAAIKREYVE
RQGKLMQKQKALTDADVRRILHDEMLTQSGFSTPSQHIGNFRI

Specific function: Repressor for the glnRA operon. Binds specifically to the promoter region of the glnRA operon [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 14377; Mature: 14377

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKELRRSMAVFPIGTVMTLTDLSARQIRYYEDQGLIKPERTQGNRRMFSLNDMDRLLE
CCHHHHHHHHHHCCCHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCEEECHHHHHHHHH
IKDFLSEGLNIAAIKREYVERQGKLMQKQKALTDADVRRILHDEMLTQSGFSTPSQHIGN
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHCCC
FRI
CCC
>Mature Secondary Structure
MKEKELRRSMAVFPIGTVMTLTDLSARQIRYYEDQGLIKPERTQGNRRMFSLNDMDRLLE
CCHHHHHHHHHHCCCHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCEEECHHHHHHHHH
IKDFLSEGLNIAAIKREYVERQGKLMQKQKALTDADVRRILHDEMLTQSGFSTPSQHIGN
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHCCC
FRI
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]