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The map label for this gene is rbfA [H]

Identifier: 19746622

GI number: 19746622

Start: 1437261

End: 1437617

Strand: Reverse

Name: rbfA [H]

Synonym: spyM18_1728

Alternate gene names: 19746622

Gene position: 1437617-1437261 (Counterclockwise)

Preceding gene: 19746623

Following gene: 19746620

Centisome position: 75.86

GC content: 38.94

Gene sequence:

>357_bases
ATGGCTATGGCTAATCATCGTATTGACCGCGTTGGGATGGAAATCAAGCGCGAAGTAAATGATATTCTTCAGAAAAAAGT
GCGTGATCCACGCGTTCAGGGAGTAACGATTACAGAAGTGCAAATGCAGGGTGACTTGTCACTTGCTAAAGTTTATTACA
CTATTATGAGTGACTTGGCATCTGATAATCAAAAAGCACAAACAGGGCTTGAAAAAGCGACTGGAACGATTAAACGTGAA
CTTGGCAAACAATTGACCATGTACAAAATTCCAGATTTGGTGTTTGAAAAAGACAATTCCATCGCCTATGGTAATAAAAT
TGATCAACTCTTACGAGAACTTGACAACAAATCCTAA

Upstream 100 bases:

>100_bases
GGAATTCTCAGATTCCCTTTAATTGTCGTTATCAAAACAGGTAGCAATGTCATAAGCTGAGCTTTCAGCCTAGCTTTTGT
TTTAAAAATGTGGAAAGGAA

Downstream 100 bases:

>100_bases
GTATTGCGGTGCGGATGTTATGACAGAAAGAGCCTTATCATTATGATAGGGCTCTTTTTAATTGTTATTTTGTGGTGCAA
ACTACAAAAAAACCACCAGA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 117

Protein sequence:

>118_residues
MAMANHRIDRVGMEIKREVNDILQKKVRDPRVQGVTITEVQMQGDLSLAKVYYTIMSDLASDNQKAQTGLEKATGTIKRE
LGKQLTMYKIPDLVFEKDNSIAYGNKIDQLLRELDNKS

Sequences:

>Translated_118_residues
MAMANHRIDRVGMEIKREVNDILQKKVRDPRVQGVTITEVQMQGDLSLAKVYYTIMSDLASDNQKAQTGLEKATGTIKRE
LGKQLTMYKIPDLVFEKDNSIAYGNKIDQLLRELDNKS
>Mature_117_residues
AMANHRIDRVGMEIKREVNDILQKKVRDPRVQGVTITEVQMQGDLSLAKVYYTIMSDLASDNQKAQTGLEKATGTIKREL
GKQLTMYKIPDLVFEKDNSIAYGNKIDQLLRELDNKS

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=113, Percent_Identity=37.1681415929204, Blast_Score=73, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13429; Mature: 13298

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMANHRIDRVGMEIKREVNDILQKKVRDPRVQGVTITEVQMQGDLSLAKVYYTIMSDLA
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHH
SDNQKAQTGLEKATGTIKRELGKQLTMYKIPDLVFEKDNSIAYGNKIDQLLRELDNKS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
AMANHRIDRVGMEIKREVNDILQKKVRDPRVQGVTITEVQMQGDLSLAKVYYTIMSDLA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHH
SDNQKAQTGLEKATGTIKRELGKQLTMYKIPDLVFEKDNSIAYGNKIDQLLRELDNKS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296 [H]