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The map label for this gene is patM [H]

Identifier: 19746578

GI number: 19746578

Start: 1390442

End: 1391335

Strand: Reverse

Name: patM [H]

Synonym: spyM18_1669

Alternate gene names: 19746578

Gene position: 1391335-1390442 (Counterclockwise)

Preceding gene: 19746579

Following gene: 19746577

Centisome position: 73.42

GC content: 38.59

Gene sequence:

>894_bases
TTGCTTATTGCTATAATACGGATTTACTATTTTACATGTGGGTCTAAGAGTGTTAGAATATTAAGACAAACAAATACAAA
GGGGAAATACACGACATCAGTGTTTTTAACCAGTGGTTGGGCTTTTTATGATCATCTCATCTCACCGATTCCACATGGGA
AACTTTTTAGTTGGCATGCTGTTTTTGATGCCATTCCAAATATTATCCAACGGCTTCCAATTACGCTTGGTTTGACACTA
TCAGGAGCAACCTTTGGCTTGGTTTTGGCTTTGATTTTTGCCCTTGTCAAAATTAATAAAGTGAAGCTACTATACCCTAT
TCAAGCTATTTTTGTGAGTTTCTTGCGAGGAACTCCTATTTTGGTACAGTTGATGTTGACCTACTACGGTATTCCCCTCT
TTCTAAAATTTCTCAATCAGAAGTATGGCTTTGATTGGAATGTTAATGCAATTCCGGCTTCTATTTTTGCCATTACAGCC
TTTGCTTTTAATGAAGCAGCCTACGCTAGTGAAACTATTCGGGCAGCCATTTTATCAGTAGATACAGGTGAAATTGAAGC
AGCAAAAAGTCTAGGCATGACTTCTGTGCAGGTTTACCGTCGTGTCATTATTCCTAATGCAACTGTTGTGGCTATTCCAA
CCTTGATTAATGGGTTAATTGGCTTAACTAAAGGAACATCGCTTGCCTTTAATGCAGGGATTGTCGAAATGTTTGCCCAG
GCTCAAATTCTAGGCGGATCAGATTACCGTTATTTTGAACGTTATATCTCTGTTGCTCTTGTCTATTGGTCTATCAGTAT
TTTGATGGAGCAAGTAGGTCGCTTGATTGAAAACAAGATGGCCATCAAAGCACCAGAACAAGCTAGAAATGAAAAGTTAG
GAGAATTGCGTTGA

Upstream 100 bases:

>100_bases
CAAAGAGCAAGTAAGTGATCAATTGGCATCTAATCTTGCTTTTTTACACCTGCTACTTGTATTGTTTACCATTTGTTAAC
ACAAAAAGTGATCATAGCTT

Downstream 100 bases:

>100_bases
TGATTACAATTAGAAATTTGAGCAAGACATTCTCAGGGCAAAAAGTTTTAGATAGTTTGGCTCTTGATATTGAAAAAGGT
CAAGTGATTGCTTTAGTTGG

Product: amino acid ABC transproter (permease protein)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MLIAIIRIYYFTCGSKSVRILRQTNTKGKYTTSVFLTSGWAFYDHLISPIPHGKLFSWHAVFDAIPNIIQRLPITLGLTL
SGATFGLVLALIFALVKINKVKLLYPIQAIFVSFLRGTPILVQLMLTYYGIPLFLKFLNQKYGFDWNVNAIPASIFAITA
FAFNEAAYASETIRAAILSVDTGEIEAAKSLGMTSVQVYRRVIIPNATVVAIPTLINGLIGLTKGTSLAFNAGIVEMFAQ
AQILGGSDYRYFERYISVALVYWSISILMEQVGRLIENKMAIKAPEQARNEKLGELR

Sequences:

>Translated_297_residues
MLIAIIRIYYFTCGSKSVRILRQTNTKGKYTTSVFLTSGWAFYDHLISPIPHGKLFSWHAVFDAIPNIIQRLPITLGLTL
SGATFGLVLALIFALVKINKVKLLYPIQAIFVSFLRGTPILVQLMLTYYGIPLFLKFLNQKYGFDWNVNAIPASIFAITA
FAFNEAAYASETIRAAILSVDTGEIEAAKSLGMTSVQVYRRVIIPNATVVAIPTLINGLIGLTKGTSLAFNAGIVEMFAQ
AQILGGSDYRYFERYISVALVYWSISILMEQVGRLIENKMAIKAPEQARNEKLGELR
>Mature_297_residues
MLIAIIRIYYFTCGSKSVRILRQTNTKGKYTTSVFLTSGWAFYDHLISPIPHGKLFSWHAVFDAIPNIIQRLPITLGLTL
SGATFGLVLALIFALVKINKVKLLYPIQAIFVSFLRGTPILVQLMLTYYGIPLFLKFLNQKYGFDWNVNAIPASIFAITA
FAFNEAAYASETIRAAILSVDTGEIEAAKSLGMTSVQVYRRVIIPNATVVAIPTLINGLIGLTKGTSLAFNAGIVEMFAQ
AQILGGSDYRYFERYISVALVYWSISILMEQVGRLIENKMAIKAPEQARNEKLGELR

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=232, Percent_Identity=35.7758620689655, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1787030, Length=227, Percent_Identity=29.9559471365639, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1788645, Length=212, Percent_Identity=31.1320754716981, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787086, Length=219, Percent_Identity=27.8538812785388, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786873, Length=217, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786874, Length=213, Percent_Identity=27.6995305164319, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788646, Length=215, Percent_Identity=27.4418604651163, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87082239, Length=229, Percent_Identity=27.9475982532751, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787087, Length=215, Percent_Identity=25.1162790697674, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32991; Mature: 32991

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIAIIRIYYFTCGSKSVRILRQTNTKGKYTTSVFLTSGWAFYDHLISPIPHGKLFSWHA
CCEEEEEEHHHHCCCCCEEEEEECCCCCCEEEEEEEECCHHHHHHHHCCCCCCCEEHHHH
VFDAIPNIIQRLPITLGLTLSGATFGLVLALIFALVKINKVKLLYPIQAIFVSFLRGTPI
HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHCCCHH
LVQLMLTYYGIPLFLKFLNQKYGFDWNVNAIPASIFAITAFAFNEAAYASETIRAAILSV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
DTGEIEAAKSLGMTSVQVYRRVIIPNATVVAIPTLINGLIGLTKGTSLAFNAGIVEMFAQ
CCCCHHHHHHCCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCCCEEEHHHHHHHHHH
AQILGGSDYRYFERYISVALVYWSISILMEQVGRLIENKMAIKAPEQARNEKLGELR
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHHCCCCCCC
>Mature Secondary Structure
MLIAIIRIYYFTCGSKSVRILRQTNTKGKYTTSVFLTSGWAFYDHLISPIPHGKLFSWHA
CCEEEEEEHHHHCCCCCEEEEEECCCCCCEEEEEEEECCHHHHHHHHCCCCCCCEEHHHH
VFDAIPNIIQRLPITLGLTLSGATFGLVLALIFALVKINKVKLLYPIQAIFVSFLRGTPI
HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHCCCHH
LVQLMLTYYGIPLFLKFLNQKYGFDWNVNAIPASIFAITAFAFNEAAYASETIRAAILSV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
DTGEIEAAKSLGMTSVQVYRRVIIPNATVVAIPTLINGLIGLTKGTSLAFNAGIVEMFAQ
CCCCHHHHHHCCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCCCEEEHHHHHHHHHH
AQILGGSDYRYFERYISVALVYWSISILMEQVGRLIENKMAIKAPEQARNEKLGELR
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA