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The map label for this gene is ylmE [H]

Identifier: 19746469

GI number: 19746469

Start: 1266595

End: 1267266

Strand: Reverse

Name: ylmE [H]

Synonym: spyM18_1536

Alternate gene names: 19746469

Gene position: 1267266-1266595 (Counterclockwise)

Preceding gene: 19746470

Following gene: 19746468

Centisome position: 66.87

GC content: 33.93

Gene sequence:

>672_bases
ATGGATTTACTGACAAATAAAAAGAAAATTTTTGAGACTATCCGCTTATCTACAGAGGCAGCAAATAGGACTAATGATAG
TGTTTCAGTTATTGCTGTAACAAAATATGTGGATAGTACAATTGCAGGTCAGCTTATCGAAGCAGGAATTGAGCACATTG
CCGAAAACCGTGTTGATAAATTTCTTGAAAAGTATGATGCGTTAAAGTATATGCCAGTAAAGTGGCATTTAATCGGTACC
TTACAACGTCGTAAAGTCAAGGAAGTTATCAATTATGTTGATTATTTTCACGCTCTAGATTCTGTGAGATTAGCTTTGGA
AATCAACAAGAGAGCTGACCATCCTGTGAAGTGTTTTCTACAAGTTAATATTTCTAAAGAAGAGAGTAAACATGGTTTTA
ACATTTCTGAGATTGATGAAGCGATTGAAGAAATAGGTAAGATGGAGAAGATACAGTTAGTTGGTTTAATGACTATGGCA
CCAGCAAATGCCAGTAAAGAAAGTATTATAACTATTTTTCGACAAGCAAATCAATTAAGAAAAAACTTGCAGTTAAAAAA
AAGAAAGAATATGCCTTTTACAGAATTGAGCATGGGCATGAGTAACGATTATCCAATTGCTATTCAAGAAGGCTCAACTT
TTATTCGGATTGGTAGAGCTTTCTTTCACTAA

Upstream 100 bases:

>100_bases
AAGGTGAATTGGATAACCATCTTAATATGTCAACGTTCTCAGCTAACGATGACAGTGATGATGAATTAGAAACGCCTCCA
TTCTTTAAAAACCGTTAATA

Downstream 100 bases:

>100_bases
TGGAGAATAAGATGGCTTTTAAAGATACATTTAACAAGATGATTTCTTATTTTGACACGGATGAGGTTAACGAAGTTGAA
GAAGATGTTGCAGCATCAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MDLLTNKKKIFETIRLSTEAANRTNDSVSVIAVTKYVDSTIAGQLIEAGIEHIAENRVDKFLEKYDALKYMPVKWHLIGT
LQRRKVKEVINYVDYFHALDSVRLALEINKRADHPVKCFLQVNISKEESKHGFNISEIDEAIEEIGKMEKIQLVGLMTMA
PANASKESIITIFRQANQLRKNLQLKKRKNMPFTELSMGMSNDYPIAIQEGSTFIRIGRAFFH

Sequences:

>Translated_223_residues
MDLLTNKKKIFETIRLSTEAANRTNDSVSVIAVTKYVDSTIAGQLIEAGIEHIAENRVDKFLEKYDALKYMPVKWHLIGT
LQRRKVKEVINYVDYFHALDSVRLALEINKRADHPVKCFLQVNISKEESKHGFNISEIDEAIEEIGKMEKIQLVGLMTMA
PANASKESIITIFRQANQLRKNLQLKKRKNMPFTELSMGMSNDYPIAIQEGSTFIRIGRAFFH
>Mature_223_residues
MDLLTNKKKIFETIRLSTEAANRTNDSVSVIAVTKYVDSTIAGQLIEAGIEHIAENRVDKFLEKYDALKYMPVKWHLIGT
LQRRKVKEVINYVDYFHALDSVRLALEINKRADHPVKCFLQVNISKEESKHGFNISEIDEAIEEIGKMEKIQLVGLMTMA
PANASKESIITIFRQANQLRKNLQLKKRKNMPFTELSMGMSNDYPIAIQEGSTFIRIGRAFFH

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=230, Percent_Identity=34.3478260869565, Blast_Score=93, Evalue=2e-19,
Organism=Escherichia coli, GI1789321, Length=227, Percent_Identity=29.9559471365639, Blast_Score=113, Evalue=8e-27,
Organism=Caenorhabditis elegans, GI17533025, Length=236, Percent_Identity=28.8135593220339, Blast_Score=80, Evalue=7e-16,
Organism=Saccharomyces cerevisiae, GI6319435, Length=234, Percent_Identity=31.1965811965812, Blast_Score=81, Evalue=1e-16,
Organism=Drosophila melanogaster, GI45550861, Length=212, Percent_Identity=25.4716981132075, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25560; Mature: 25560

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLTNKKKIFETIRLSTEAANRTNDSVSVIAVTKYVDSTIAGQLIEAGIEHIAENRVDK
CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLEKYDALKYMPVKWHLIGTLQRRKVKEVINYVDYFHALDSVRLALEINKRADHPVKCFL
HHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEEE
QVNISKEESKHGFNISEIDEAIEEIGKMEKIQLVGLMTMAPANASKESIITIFRQANQLR
EEECCCHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHH
KNLQLKKRKNMPFTELSMGMSNDYPIAIQEGSTFIRIGRAFFH
HHHHHHHHCCCCHHHHHCCCCCCCCEEEECCCEEEEHHHHHCC
>Mature Secondary Structure
MDLLTNKKKIFETIRLSTEAANRTNDSVSVIAVTKYVDSTIAGQLIEAGIEHIAENRVDK
CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLEKYDALKYMPVKWHLIGTLQRRKVKEVINYVDYFHALDSVRLALEINKRADHPVKCFL
HHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEEE
QVNISKEESKHGFNISEIDEAIEEIGKMEKIQLVGLMTMAPANASKESIITIFRQANQLR
EEECCCHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHH
KNLQLKKRKNMPFTELSMGMSNDYPIAIQEGSTFIRIGRAFFH
HHHHHHHHCCCCHHHHHCCCCCCCCEEEECCCEEEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]