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The map label for this gene is ymdB [C]

Identifier: 19746149

GI number: 19746149

Start: 977501

End: 978313

Strand: Reverse

Name: ymdB [C]

Synonym: spyM18_1168

Alternate gene names: 19746149

Gene position: 978313-977501 (Counterclockwise)

Preceding gene: 19746150

Following gene: 19746148

Centisome position: 51.63

GC content: 40.34

Gene sequence:

>813_bases
ATGCCTAGTTCATTTGATTTATTAGGGGAAATGATTGGTCTGTTGCAAACAGAGCAGCTTACTAGTTCTTTAGCCTGTCC
CTTGCCTAATGCTTTAACAAAGCGACAAGACTTGTGGCGGGCGCTCATTAACCAGCGCCCTGCTTTGCCTTTATCAAAAG
ATTACTTGAATCTGGAAGATGCTTATCTGGATGATTGGCGTGCTTCTTTTGTTCCTGTATCAGTCAAGGATTGCCAAAAA
ACTAATTATACCAGTCTTTTTCTTTACCATGGGGATATTAGGTACCTTGCTGTGGATGCTATTGTCAATGCTGCTAATAG
TGAGTTATTGGGATGTTTTATTCCTAATCATGGCTGTATTGATAATGCGATTCATACGTTTGCCGGAAGTCGTTTACGCT
TAGCTTGTCAGGCAATCATGACTGAACAAGGCCGTAAGGAAGCCATTGGCCAAGCAAAGCTTACCAGTGCTTATCATCTA
CCAGCCTCTTATATTATTCATACCGTAGGGCCAAGAATTACCAAAGGACGACACGTTTCTCCGATTCGAGCTGATTTGTT
AGCACGTTGTTATCGTTCTAGTCTTGATTTGGCGGTTAAAGCAGGATTGACTAGCCTAGCTTTTTGCTCTATTTCAACAG
GAGAATTTGGCTTTCCTAAAAAAGAAGCCGCTCAGATTGCTATTAAGACAGTTTTAAAATGGCAAGCAGAACATCCAGAA
TCTAAGACCTTAACTATCATTTTTAATACCTTTACATCAGAAGACAAGGCCTTATACGACACTTATTTGCAAAAGGAGAA
TAACTGTGAGTAA

Upstream 100 bases:

>100_bases
GCCACACTAACACCAACCCTTTTGAATTCAGAAAAAGCTGAGGAAAATTGGATTGTTGTGCTAACAGATGTTGATCAAGC
AGCTTTTGATGCCTTAGAAG

Downstream 100 bases:

>100_bases
TTGGACAACCTATCCTCAGAAAAACCTCACCCAGGCAGAACAACTGGCCCAATTAATCAAAGAAGCAGATGCACTTGTAG
TTGGTATTGGAGCTGGCATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MPSSFDLLGEMIGLLQTEQLTSSLACPLPNALTKRQDLWRALINQRPALPLSKDYLNLEDAYLDDWRASFVPVSVKDCQK
TNYTSLFLYHGDIRYLAVDAIVNAANSELLGCFIPNHGCIDNAIHTFAGSRLRLACQAIMTEQGRKEAIGQAKLTSAYHL
PASYIIHTVGPRITKGRHVSPIRADLLARCYRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTVLKWQAEHPE
SKTLTIIFNTFTSEDKALYDTYLQKENNCE

Sequences:

>Translated_270_residues
MPSSFDLLGEMIGLLQTEQLTSSLACPLPNALTKRQDLWRALINQRPALPLSKDYLNLEDAYLDDWRASFVPVSVKDCQK
TNYTSLFLYHGDIRYLAVDAIVNAANSELLGCFIPNHGCIDNAIHTFAGSRLRLACQAIMTEQGRKEAIGQAKLTSAYHL
PASYIIHTVGPRITKGRHVSPIRADLLARCYRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTVLKWQAEHPE
SKTLTIIFNTFTSEDKALYDTYLQKENNCE
>Mature_269_residues
PSSFDLLGEMIGLLQTEQLTSSLACPLPNALTKRQDLWRALINQRPALPLSKDYLNLEDAYLDDWRASFVPVSVKDCQKT
NYTSLFLYHGDIRYLAVDAIVNAANSELLGCFIPNHGCIDNAIHTFAGSRLRLACQAIMTEQGRKEAIGQAKLTSAYHLP
ASYIIHTVGPRITKGRHVSPIRADLLARCYRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTVLKWQAEHPES
KTLTIIFNTFTSEDKALYDTYLQKENNCE

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain

Homologues:

Organism=Homo sapiens, GI117968621, Length=249, Percent_Identity=35.3413654618474, Blast_Score=120, Evalue=9e-28,
Organism=Homo sapiens, GI13569840, Length=228, Percent_Identity=38.5964912280702, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI8923143, Length=156, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI207450721, Length=156, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI154813199, Length=134, Percent_Identity=36.5671641791045, Blast_Score=74, Evalue=1e-13,
Organism=Escherichia coli, GI1787283, Length=187, Percent_Identity=38.5026737967914, Blast_Score=106, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17538214, Length=180, Percent_Identity=40.5555555555556, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24586353, Length=242, Percent_Identity=27.6859504132231, Blast_Score=71, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1168_STRP8 (Q8P0X2)

Other databases:

- EMBL:   AE009949
- RefSeq:   NP_607285.1
- ProteinModelPortal:   Q8P0X2
- SMR:   Q8P0X2
- EnsemblBacteria:   EBSTRT00000029330
- GeneID:   994096
- GenomeReviews:   AE009949_GR
- KEGG:   spm:spyM18_1168
- GeneTree:   EBGT00050000028275
- HOGENOM:   HBG682503
- OMA:   PRITKGR
- ProtClustDB:   PRK04143
- BioCyc:   SPYO186103:SPYM18_1168-MONOMER
- HAMAP:   MF_01205_B
- InterPro:   IPR002589
- InterPro:   IPR022942
- SMART:   SM00506

Pfam domain/function: PF01661 Macro

EC number: NA

Molecular weight: Translated: 30002; Mature: 29871

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSSFDLLGEMIGLLQTEQLTSSLACPLPNALTKRQDLWRALINQRPALPLSKDYLNLED
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
AYLDDWRASFVPVSVKDCQKTNYTSLFLYHGDIRYLAVDAIVNAANSELLGCFIPNHGCI
HHHHCHHHCEEEEEHHHCCCCCCEEEEEEECCCCEEHHHHHHHCCCCCEEEEECCCCCCH
DNAIHTFAGSRLRLACQAIMTEQGRKEAIGQAKLTSAYHLPASYIIHTVGPRITKGRHVS
HHHHHHHCCCHHHHHHHHHHHHCCHHHHHCHHHHHHHHCCCHHHHHHHCCCCCCCCCCCC
PIRADLLARCYRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTVLKWQAEHPE
HHHHHHHHHHHHHCCCHHHHHCCHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCC
SKTLTIIFNTFTSEDKALYDTYLQKENNCE
CCEEEEEEECCCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PSSFDLLGEMIGLLQTEQLTSSLACPLPNALTKRQDLWRALINQRPALPLSKDYLNLED
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
AYLDDWRASFVPVSVKDCQKTNYTSLFLYHGDIRYLAVDAIVNAANSELLGCFIPNHGCI
HHHHCHHHCEEEEEHHHCCCCCCEEEEEEECCCCEEHHHHHHHCCCCCEEEEECCCCCCH
DNAIHTFAGSRLRLACQAIMTEQGRKEAIGQAKLTSAYHLPASYIIHTVGPRITKGRHVS
HHHHHHHCCCHHHHHHHHHHHHCCHHHHHCHHHHHHHHCCCHHHHHHHCCCCCCCCCCCC
PIRADLLARCYRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTVLKWQAEHPE
HHHHHHHHHHHHHCCCHHHHHCCHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCC
SKTLTIIFNTFTSEDKALYDTYLQKENNCE
CCEEEEEEECCCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11917108