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The map label for this gene is ydhC [H]

Identifier: 19746117

GI number: 19746117

Start: 944736

End: 945431

Strand: Reverse

Name: ydhC [H]

Synonym: spyM18_1131

Alternate gene names: 19746117

Gene position: 945431-944736 (Counterclockwise)

Preceding gene: 19746118

Following gene: 19746116

Centisome position: 49.89

GC content: 35.63

Gene sequence:

>696_bases
ATGAATCCTATTATCGAAGCCGTTAAACAAAATCTTGACCTATCAAGAAATATCCCTTTGAAAATAGCCTTTTATAACGC
TCTTAAAAAGACCATTATTTTGCGACAAATTCCTGTTGGAAGCCGCATTAATGAAAAAGAGTTTTCCATTGCGCTTAATA
TTAGCAGGACACCTATTCGCTACGCTTTGGGATTATTGTCTGAAGAACACCTTGTAGAGCACATTCCTAAAAAAGGCATT
ATTGTCAAAGGAGTTAGTATCAAGGATGCCTGTGAAATTTTTGAAATTCGAAAAGCTCTAGAGACTCTCGCAACAGTGCA
AGCGATGCATTTAATGACAGAAGAAGATTTTAAAGTCATGCATAACTTGTTGGAAGACTGTGAAACCTTTATCGCAGAGG
ATGACACCAATCGTATTTTGGATAATTTTAATGCCTTTAACAATTTGATTTACAGCTATAGCCAAATGGTCCGCTTAAAA
GAAATTGTGACAGAATTGCAGACTTATTTGGTCTACTTTAGAAAAATTTCGATTTCTTCAGTTGAACGCCGTAAACGAGC
TCTATCTGAACACTGGATGATTTACCGAGGTATGAAGAACAAAGATCATGAGCAAATTACGTTGATTACACATGAACACT
TGAATAGCTCACTTGAATTTATCTTAAAAGAAATGAGGCCTGAGCAAAATGACTAA

Upstream 100 bases:

>100_bases
GTGAGCATGGCTTTAATTTTTCAGAACTCATCTAGTCCTATTGGAATGTTTCACAAATTTAAGTATAATAAAGTGAGGAC
ACTAGCATTAAGGAGATGAC

Downstream 100 bases:

>100_bases
GGCAGTTCTAACAAGTATTAGTCAACTGGCCTTAAAAGCTTTGCTTTATGAAGTCTCACTATCTCCAAAACCTGGTTTAG
TTGATCGATTTGATAACGGT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MNPIIEAVKQNLDLSRNIPLKIAFYNALKKTIILRQIPVGSRINEKEFSIALNISRTPIRYALGLLSEEHLVEHIPKKGI
IVKGVSIKDACEIFEIRKALETLATVQAMHLMTEEDFKVMHNLLEDCETFIAEDDTNRILDNFNAFNNLIYSYSQMVRLK
EIVTELQTYLVYFRKISISSVERRKRALSEHWMIYRGMKNKDHEQITLITHEHLNSSLEFILKEMRPEQND

Sequences:

>Translated_231_residues
MNPIIEAVKQNLDLSRNIPLKIAFYNALKKTIILRQIPVGSRINEKEFSIALNISRTPIRYALGLLSEEHLVEHIPKKGI
IVKGVSIKDACEIFEIRKALETLATVQAMHLMTEEDFKVMHNLLEDCETFIAEDDTNRILDNFNAFNNLIYSYSQMVRLK
EIVTELQTYLVYFRKISISSVERRKRALSEHWMIYRGMKNKDHEQITLITHEHLNSSLEFILKEMRPEQND
>Mature_231_residues
MNPIIEAVKQNLDLSRNIPLKIAFYNALKKTIILRQIPVGSRINEKEFSIALNISRTPIRYALGLLSEEHLVEHIPKKGI
IVKGVSIKDACEIFEIRKALETLATVQAMHLMTEEDFKVMHNLLEDCETFIAEDDTNRILDNFNAFNNLIYSYSQMVRLK
EIVTELQTYLVYFRKISISSVERRKRALSEHWMIYRGMKNKDHEQITLITHEHLNSSLEFILKEMRPEQND

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=213, Percent_Identity=22.5352112676056, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27031; Mature: 27031

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPIIEAVKQNLDLSRNIPLKIAFYNALKKTIILRQIPVGSRINEKEFSIALNISRTPIR
CCHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHH
YALGLLSEEHLVEHIPKKGIIVKGVSIKDACEIFEIRKALETLATVQAMHLMTEEDFKVM
HHHHHHCHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HNLLEDCETFIAEDDTNRILDNFNAFNNLIYSYSQMVRLKEIVTELQTYLVYFRKISISS
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VERRKRALSEHWMIYRGMKNKDHEQITLITHEHLNSSLEFILKEMRPEQND
HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNPIIEAVKQNLDLSRNIPLKIAFYNALKKTIILRQIPVGSRINEKEFSIALNISRTPIR
CCHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHH
YALGLLSEEHLVEHIPKKGIIVKGVSIKDACEIFEIRKALETLATVQAMHLMTEEDFKVM
HHHHHHCHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HNLLEDCETFIAEDDTNRILDNFNAFNNLIYSYSQMVRLKEIVTELQTYLVYFRKISISS
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VERRKRALSEHWMIYRGMKNKDHEQITLITHEHLNSSLEFILKEMRPEQND
HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]