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The map label for this gene is yxkH [H]

Identifier: 19746045

GI number: 19746045

Start: 874196

End: 875158

Strand: Reverse

Name: yxkH [H]

Synonym: spyM18_1053

Alternate gene names: 19746045

Gene position: 875158-874196 (Counterclockwise)

Preceding gene: 19746046

Following gene: 19746043

Centisome position: 46.18

GC content: 36.24

Gene sequence:

>963_bases
ATGAACAATAGACATAAACGGCGCCAAAAAAGAAAAGCCTTCACTCTCATTAACCTTATACTATTATTTGCCTGCATTCT
TGGTTTGACCCTCATTTTCTATTTATATCAAGGGTCTAACAAATTCGGCTTGTCAGATGTCTCTCAATTTGTACCTAAAA
TAAGTCTTTTTCATCACAAAAAGACGGCAAAAAAAGAAACGACAAAACTTAAGAAGACTCATTTCGATTCCTCAAAATCT
CAAAAAAAGGCCCATTCTAAATTAACTTGGACCAAGCAAGAAACACCTGTCAAGATCCCAATTTTAATGTATCATGCTAT
TCATGTAATGTCCCCTGAAGAGACGGCCAATGCTAATTTGATTGTCAACCCAGATCTCTTTGATCAACAACTTCAAAAAA
TGAAAGACGAGGGCTACTATTTTTTGAGTCCTGAAGAGGTCTACCGCGCTCTTTCAAATAATGAATTGCCTGCTAAAAAA
GTTGTATGGCTAACATTTGATGACAGTATGATTGATTTCTACAACGTTGCTTACCCAATCTTAAAAAAATATGATGCTAA
AGCCACCAATAATGTTATTACAGGACTAACCGAAATGGGAAGCGCTGCCAATCTGACTCTTAAGCAGATGAAAGAAATGA
AACAATTCGGTATGTCTTTCCAAGATCATACAGTGAATCATCCTGATTTAGAGCAGGCTAGTCCTGATGTTCAAACAACT
GAAATGAAAGATTCAAAGGACTATCTTGATAAGCAATTAAACCAAAACACTATTGCCATTGCTTATCCATCTGGTAGATA
TAATGACACTACCTTACAAATTGCAGCTAGACTTAACTATAAATTAGGTGTTACCACTAACGAAGGAATAGCTAGCGCGG
CTAATGGACTTCTTTCTCTTAACCGGATTCGTATCCTCCCAAACATGAGTCCTGAAAATCTTTTACAAACAATGGAACCA
TAA

Upstream 100 bases:

>100_bases
CACGTTCTTCCAAAAAACAAGAAAAAAGGCTGACTTCAAGCCTTCTTTTCTCTAAAAAATGTTACAATAGAGGTACTTAT
ATCAAAAAAAGGAGCAAGTA

Downstream 100 bases:

>100_bases
CATCAATTTTTTTATCATTCCAAATCATACTCACTATAAACTAAAAAGACAGTTATGAAAAAATTCTTTCATAACTGTCT
TTTTTGATTGTTTTAAAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MNNRHKRRQKRKAFTLINLILLFACILGLTLIFYLYQGSNKFGLSDVSQFVPKISLFHHKKTAKKETTKLKKTHFDSSKS
QKKAHSKLTWTKQETPVKIPILMYHAIHVMSPEETANANLIVNPDLFDQQLQKMKDEGYYFLSPEEVYRALSNNELPAKK
VVWLTFDDSMIDFYNVAYPILKKYDAKATNNVITGLTEMGSAANLTLKQMKEMKQFGMSFQDHTVNHPDLEQASPDVQTT
EMKDSKDYLDKQLNQNTIAIAYPSGRYNDTTLQIAARLNYKLGVTTNEGIASAANGLLSLNRIRILPNMSPENLLQTMEP

Sequences:

>Translated_320_residues
MNNRHKRRQKRKAFTLINLILLFACILGLTLIFYLYQGSNKFGLSDVSQFVPKISLFHHKKTAKKETTKLKKTHFDSSKS
QKKAHSKLTWTKQETPVKIPILMYHAIHVMSPEETANANLIVNPDLFDQQLQKMKDEGYYFLSPEEVYRALSNNELPAKK
VVWLTFDDSMIDFYNVAYPILKKYDAKATNNVITGLTEMGSAANLTLKQMKEMKQFGMSFQDHTVNHPDLEQASPDVQTT
EMKDSKDYLDKQLNQNTIAIAYPSGRYNDTTLQIAARLNYKLGVTTNEGIASAANGLLSLNRIRILPNMSPENLLQTMEP
>Mature_320_residues
MNNRHKRRQKRKAFTLINLILLFACILGLTLIFYLYQGSNKFGLSDVSQFVPKISLFHHKKTAKKETTKLKKTHFDSSKS
QKKAHSKLTWTKQETPVKIPILMYHAIHVMSPEETANANLIVNPDLFDQQLQKMKDEGYYFLSPEEVYRALSNNELPAKK
VVWLTFDDSMIDFYNVAYPILKKYDAKATNNVITGLTEMGSAANLTLKQMKEMKQFGMSFQDHTVNHPDLEQASPDVQTT
EMKDSKDYLDKQLNQNTIAIAYPSGRYNDTTLQIAARLNYKLGVTTNEGIASAANGLLSLNRIRILPNMSPENLLQTMEP

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Escherichia coli, GI1786322, Length=235, Percent_Identity=27.2340425531915, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 36544; Mature: 36544

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNRHKRRQKRKAFTLINLILLFACILGLTLIFYLYQGSNKFGLSDVSQFVPKISLFHHK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
KTAKKETTKLKKTHFDSSKSQKKAHSKLTWTKQETPVKIPILMYHAIHVMSPEETANANL
HHHHHHHHHHHHHHCCCCHHHHHHHHHCEECCCCCCEEEHHHHHHHHHEECCCCCCCCEE
IVNPDLFDQQLQKMKDEGYYFLSPEEVYRALSNNELPAKKVVWLTFDDSMIDFYNVAYPI
EECCCHHHHHHHHHHHCCEEEECHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHH
LKKYDAKATNNVITGLTEMGSAANLTLKQMKEMKQFGMSFQDHTVNHPDLEQASPDVQTT
HHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCEEC
EMKDSKDYLDKQLNQNTIAIAYPSGRYNDTTLQIAARLNYKLGVTTNEGIASAANGLLSL
CCCCHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEECEEEECCCCCCHHHHHHHHHEE
NRIRILPNMSPENLLQTMEP
CEEEECCCCCHHHHHHHCCC
>Mature Secondary Structure
MNNRHKRRQKRKAFTLINLILLFACILGLTLIFYLYQGSNKFGLSDVSQFVPKISLFHHK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
KTAKKETTKLKKTHFDSSKSQKKAHSKLTWTKQETPVKIPILMYHAIHVMSPEETANANL
HHHHHHHHHHHHHHCCCCHHHHHHHHHCEECCCCCCEEEHHHHHHHHHEECCCCCCCCEE
IVNPDLFDQQLQKMKDEGYYFLSPEEVYRALSNNELPAKKVVWLTFDDSMIDFYNVAYPI
EECCCHHHHHHHHHHHCCEEEECHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHH
LKKYDAKATNNVITGLTEMGSAANLTLKQMKEMKQFGMSFQDHTVNHPDLEQASPDVQTT
HHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCEEC
EMKDSKDYLDKQLNQNTIAIAYPSGRYNDTTLQIAARLNYKLGVTTNEGIASAANGLLSL
CCCCHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEECEEEECCCCCCHHHHHHHHHEE
NRIRILPNMSPENLLQTMEP
CEEEECCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]