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The map label for this gene is ydeD [C]

Identifier: 18978415

GI number: 18978415

Start: 1884653

End: 1885528

Strand: Reverse

Name: ydeD [C]

Synonym: PF2043

Alternate gene names: 18978415

Gene position: 1885528-1884653 (Counterclockwise)

Preceding gene: 18978417

Following gene: 33359590

Centisome position: 98.81

GC content: 40.53

Gene sequence:

>876_bases
ATGTTGAGCAAACATTATAAGCTTAAGTTCCCAGGAACTCTTGCAATGAAGGGAGGCTATCTCTTTGTGTTTTTGGCTGC
GGTCATGTGGGGAACTCTGGGAATATTCGCAAAGTTTCTCTATGGATTTAATCTCTCAACTTATACGATAGTTTTCTACA
GGGTTCTCTTTGCGCTAATATTCTTGGCAGTTTATCTTAAAGTTAGGGGTCTCCCTTTGCTGATGTCTAAAGATAGGCTC
CCCTTTTACCTGGGTTTTTCCTTCTTTAGCATTTTTCTCTTTTATTCTCTCTACTTTTACACAGTTAAGATATCATCAGT
CTCTTTCGCCGTTTTAATGCTTTATACTGCCCCAGTCTACTCCCTAATTTTTGGAAGAATACTATTTGGGGAAAAGCTCA
CTCCCAGTAAACTTACTGCAGTTTTTCTTGTAATTCTCGGTGTTTTGTTATTGAACCTGGACGGAAAACTTAACGTTTCA
AAGCTAGCTTTATTGACTGGACTTGCAAGTGGACTCACATACTCCCTTTATGGAGTCTTTGTGAAGTTTGCAGTGAGAAG
GGAAGAGCCCGAGAGAGTTCTCTTTAACGTCTTATTAATTGGTCTGCTCTTTCTCTTGCCAGTGACTGATTTAAGAGTTC
CCACAGCCGCCCTTCCTTATCTCTTAGGACTTGCTTTCTTTCCCACATTCCTGGGGTATATCTTGTATAATACGGCTCTC
AAGACTGTAGAGGTTAGCAAGGCCTCGATAATTGCAACTATTGAGCCGGTAGTTGCTATTATCCTAGCTTACTTTATATT
TGGAGAGGCACTTTCTTTACTCCAATATCTCGGTGCTTCCCTTATAATAGCTGGAGCAATTCTAGCAAAGAGGTAG

Upstream 100 bases:

>100_bases
GCCTCTGCTAGTCCTCCGACCTTTATGGGTAAGTATTCAAAGCCAAGCAAAAGTACCTTCATTCTTTCACCCTTATGAAT
ATCTGAGTTTGGGTATATGA

Downstream 100 bases:

>100_bases
CTATTCTTTGGAGCTTTCTCCCCTCATAACGGCCGATGCAACTATGTGGGCAATCCTCAGGGCCTCTGGAATTAGGGAAT
TCCGAGAGGTTGCTCTTATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MLSKHYKLKFPGTLAMKGGYLFVFLAAVMWGTLGIFAKFLYGFNLSTYTIVFYRVLFALIFLAVYLKVRGLPLLMSKDRL
PFYLGFSFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPVYSLIFGRILFGEKLTPSKLTAVFLVILGVLLLNLDGKLNVS
KLALLTGLASGLTYSLYGVFVKFAVRREEPERVLFNVLLIGLLFLLPVTDLRVPTAALPYLLGLAFFPTFLGYILYNTAL
KTVEVSKASIIATIEPVVAIILAYFIFGEALSLLQYLGASLIIAGAILAKR

Sequences:

>Translated_291_residues
MLSKHYKLKFPGTLAMKGGYLFVFLAAVMWGTLGIFAKFLYGFNLSTYTIVFYRVLFALIFLAVYLKVRGLPLLMSKDRL
PFYLGFSFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPVYSLIFGRILFGEKLTPSKLTAVFLVILGVLLLNLDGKLNVS
KLALLTGLASGLTYSLYGVFVKFAVRREEPERVLFNVLLIGLLFLLPVTDLRVPTAALPYLLGLAFFPTFLGYILYNTAL
KTVEVSKASIIATIEPVVAIILAYFIFGEALSLLQYLGASLIIAGAILAKR
>Mature_291_residues
MLSKHYKLKFPGTLAMKGGYLFVFLAAVMWGTLGIFAKFLYGFNLSTYTIVFYRVLFALIFLAVYLKVRGLPLLMSKDRL
PFYLGFSFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPVYSLIFGRILFGEKLTPSKLTAVFLVILGVLLLNLDGKLNVS
KLALLTGLASGLTYSLYGVFVKFAVRREEPERVLFNVLLIGLLFLLPVTDLRVPTAALPYLLGLAFFPTFLGYILYNTAL
KTVEVSKASIIATIEPVVAIILAYFIFGEALSLLQYLGASLIIAGAILAKR

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004779
- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32417; Mature: 32417

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSKHYKLKFPGTLAMKGGYLFVFLAAVMWGTLGIFAKFLYGFNLSTYTIVFYRVLFALI
CCCCCEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
FLAVYLKVRGLPLLMSKDRLPFYLGFSFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPVY
HHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLIFGRILFGEKLTPSKLTAVFLVILGVLLLNLDGKLNVSKLALLTGLASGLTYSLYGVF
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VKFAVRREEPERVLFNVLLIGLLFLLPVTDLRVPTAALPYLLGLAFFPTFLGYILYNTAL
HHHHHHCCCHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KTVEVSKASIIATIEPVVAIILAYFIFGEALSLLQYLGASLIIAGAILAKR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLSKHYKLKFPGTLAMKGGYLFVFLAAVMWGTLGIFAKFLYGFNLSTYTIVFYRVLFALI
CCCCCEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
FLAVYLKVRGLPLLMSKDRLPFYLGFSFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPVY
HHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLIFGRILFGEKLTPSKLTAVFLVILGVLLLNLDGKLNVSKLALLTGLASGLTYSLYGVF
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VKFAVRREEPERVLFNVLLIGLLFLLPVTDLRVPTAALPYLLGLAFFPTFLGYILYNTAL
HHHHHHCCCHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KTVEVSKASIIATIEPVVAIILAYFIFGEALSLLQYLGASLIIAGAILAKR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]