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The map label for this gene is (hspc4-1 [H]

Identifier: 18978255

GI number: 18978255

Start: 1736497

End: 1737000

Strand: Reverse

Name: (hspc4-1 [H]

Synonym: PF1883

Alternate gene names: 18978255

Gene position: 1737000-1736497 (Counterclockwise)

Preceding gene: 18978259

Following gene: 18978254

Centisome position: 91.03

GC content: 43.65

Gene sequence:

>504_bases
ATGGTGAGGAGAATAAGAAGATGGGACATATGGGATCCATTCGACCTAATAAGGGAAATACAAGAGGAAATTGATGCAAT
GTTCGATGAATTCTTCAGCAGGCCAAGGCTCTGGACTTACAGAAGGTGGAGCGAGCCAGCAATGTATGAGGAGAGAGTAG
GAGAAGTCTGGAGAGAGCCATTCGTTGATATCTTTGACAACGGAGATGAGTTTGTAATCACGGCAGAGCTTCCAGGAGTG
AGAAAAGAAGACATCAAAGTGAGGGTTACAGAGGATACAGTATACATTGAGGCCACAGTTAAGAGGGAGAAAGAATTAGA
AAGAGAAGGAGCAGTGAGAATAGAGAGATACTTTACAGGGTATAGAAGAGCCATCAGGCTTCCAGAAGAAGTTATTCCAG
AGAAGGCAAAGGCCAAGTACAACAACGGAGTGCTTGAGATCAGAGTTCCAAAGAAGCACCCAACAAAGAAGGAGAGTGAA
GGATTCGAAGTTAAAGTTGAATAG

Upstream 100 bases:

>100_bases
ATTTTTGATTGTTCGGTAAATTCTACTCTTATCGAAATATTTATAAACCCCAAATAATTTAATAACTAATGGTAACCAAA
AGTGGGAGGGGGTGAGAGAG

Downstream 100 bases:

>100_bases
CTTTAGTACCCTTCTTTCTTGATATTTGGAAATATTTTTGGAGGTATTGGTTCTATTATCAATTAATTCCTTTTATTTTC
AAAATCCTTGGATCATAACC

Product: small heat shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MVRRIRRWDIWDPFDLIREIQEEIDAMFDEFFSRPRLWTYRRWSEPAMYEERVGEVWREPFVDIFDNGDEFVITAELPGV
RKEDIKVRVTEDTVYIEATVKREKELEREGAVRIERYFTGYRRAIRLPEEVIPEKAKAKYNNGVLEIRVPKKHPTKKESE
GFEVKVE

Sequences:

>Translated_167_residues
MVRRIRRWDIWDPFDLIREIQEEIDAMFDEFFSRPRLWTYRRWSEPAMYEERVGEVWREPFVDIFDNGDEFVITAELPGV
RKEDIKVRVTEDTVYIEATVKREKELEREGAVRIERYFTGYRRAIRLPEEVIPEKAKAKYNNGVLEIRVPKKHPTKKESE
GFEVKVE
>Mature_167_residues
MVRRIRRWDIWDPFDLIREIQEEIDAMFDEFFSRPRLWTYRRWSEPAMYEERVGEVWREPFVDIFDNGDEFVITAELPGV
RKEDIKVRVTEDTVYIEATVKREKELEREGAVRIERYFTGYRRAIRLPEEVIPEKAKAKYNNGVLEIRVPKKHPTKKESE
GFEVKVE

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 20256; Mature: 20256

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRRIRRWDIWDPFDLIREIQEEIDAMFDEFFSRPRLWTYRRWSEPAMYEERVGEVWREP
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCC
FVDIFDNGDEFVITAELPGVRKEDIKVRVTEDTVYIEATVKREKELEREGAVRIERYFTG
CHHEECCCCCEEEEECCCCCCCCCEEEEEECCEEEEEEEHHHHHHHHHHCCHHHHHHHHH
YRRAIRLPEEVIPEKAKAKYNNGVLEIRVPKKHPTKKESEGFEVKVE
HHHHHCCCHHHCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEC
>Mature Secondary Structure
MVRRIRRWDIWDPFDLIREIQEEIDAMFDEFFSRPRLWTYRRWSEPAMYEERVGEVWREP
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCC
FVDIFDNGDEFVITAELPGVRKEDIKVRVTEDTVYIEATVKREKELEREGAVRIERYFTG
CHHEECCCCCEEEEECCCCCCCCCEEEEEECCEEEEEEEHHHHHHHHHHCCHHHHHHHHH
YRRAIRLPEEVIPEKAKAKYNNGVLEIRVPKKHPTKKESEGFEVKVE
HHHHHCCCHHHCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA