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The map label for this gene is albA [H]

Identifier: 18978253

GI number: 18978253

Start: 1733551

End: 1733832

Strand: Reverse

Name: albA [H]

Synonym: PF1881

Alternate gene names: 18978253

Gene position: 1733832-1733551 (Counterclockwise)

Preceding gene: 18978254

Following gene: 18978248

Centisome position: 90.86

GC content: 45.39

Gene sequence:

>282_bases
ATGGCTGAGGAGCACGTTGTTTACATTGGAAAGAAGCCTGTTATGAACTATGTCCTAGCCGTAATAACCCAGTTCAACGA
GGGAGCAAAGGAGGTCTCAATAAAGGCCCGTGGTAGGGCTATTAGCAGAGCTGTTGATGTAGCAGAAATCGTCAGAAACA
GGTTCCTCAAGGACACCGTTGACATTAAGGAGATTAAGATCGGTACTGAGGAGCTTCCAACTGCAGACGGTAGAACAACA
AACACTTCAACTATTGAGATCGTTCTAGAGAGAAAGGTCTGA

Upstream 100 bases:

>100_bases
TCCTTTACCTTTTTCTTCAACATTAATTTGGACGCTGACCGAAAAGTATTTAACTGTATCTCAACATTTCGTTGATGACA
AACTCAGGAGGTGGCAAGAG

Downstream 100 bases:

>100_bases
TTTCATTTCCTTTCCTTTTCACTTTCAACCTTTTCTACTAGCTCATCTAATAGTTCTTTAAATTTAAATGCATCAACCCA
TTTAATTCCCATCTTCTCTG

Product: DNA/RNA-binding protein albA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 93; Mature: 92

Protein sequence:

>93_residues
MAEEHVVYIGKKPVMNYVLAVITQFNEGAKEVSIKARGRAISRAVDVAEIVRNRFLKDTVDIKEIKIGTEELPTADGRTT
NTSTIEIVLERKV

Sequences:

>Translated_93_residues
MAEEHVVYIGKKPVMNYVLAVITQFNEGAKEVSIKARGRAISRAVDVAEIVRNRFLKDTVDIKEIKIGTEELPTADGRTT
NTSTIEIVLERKV
>Mature_92_residues
AEEHVVYIGKKPVMNYVLAVITQFNEGAKEVSIKARGRAISRAVDVAEIVRNRFLKDTVDIKEIKIGTEELPTADGRTTN
TSTIEIVLERKV

Specific function: Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May

COG id: COG1581

COG function: function code K; Archaeal DNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Probable). Chromosome (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the histone-like Alba family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013795
- InterPro:   IPR002775 [H]

Pfam domain/function: PF01918 Alba [H]

EC number: NA

Molecular weight: Translated: 10385; Mature: 10254

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEEHVVYIGKKPVMNYVLAVITQFNEGAKEVSIKARGRAISRAVDVAEIVRNRFLKDTV
CCCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEHHCCHHHHHHHHHHHHHHHHHHHCCC
DIKEIKIGTEELPTADGRTTNTSTIEIVLERKV
CHHHEEECCCCCCCCCCCCCCCCEEEEEEECCC
>Mature Secondary Structure 
AEEHVVYIGKKPVMNYVLAVITQFNEGAKEVSIKARGRAISRAVDVAEIVRNRFLKDTV
CCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEHHCCHHHHHHHHHHHHHHHHHHHCCC
DIKEIKIGTEELPTADGRTTNTSTIEIVLERKV
CHHHEEECCCCCCCCCCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]