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The map label for this gene is gap [H]

Identifier: 18978246

GI number: 18978246

Start: 1728228

End: 1729232

Strand: Direct

Name: gap [H]

Synonym: PF1874

Alternate gene names: 18978246

Gene position: 1728228-1729232 (Clockwise)

Preceding gene: 18978245

Following gene: 18978247

Centisome position: 90.57

GC content: 40.2

Gene sequence:

>1005_bases
GTGAAAATAAAGGTCGGAATTAATGGATATGGGACAATTGGAAAGAGGGTAGCCTACGCCGTAACTAAGCAAGATGACAT
GGAGCTCATAGGAGTTACAAAAACTAAGCCTGATTTTGAAGCTTACAGAGCAAAAGAACTTGGAATCCCAGTATACGCCG
CAAGTGAGGAATTCCTTCCAAGATTTGAAAAAGCTGGATTTGAGGTTGAAGGAACACTCAATGACTTGTTGGAAAAGGTA
GACATAATTGTAGATGCAACTCCCGGAGGAATGGGAGAGAAAAATAAGCAACTCTATGAGAAGGCGGGAGTTAAGGCTAT
TTTCCAAGGGGGAGAAAAAGCTGAAGTTGCTCAAGTTTCTTTTGTAGCTCAAGCAAACTATGAAGCTGCCCTTGGAAAAG
ATTACGTGAGGGTTGTCTCTTGTAACACTACAGGGTTAGTGAGAACTCTCAATGCAATAAAAGATTACGTTGATTACGTA
TATGCCGTAATGATTAGGAGAGCTGCCGATCCAAACGACATTAAGAGAGGACCAATAAACGCTATAAAACCGAGCGTAAC
AATTCCTTCCCACCATGGACCAGATGTGCAAACTGTAATCCCAATAAACATAGAAACTTCTGCATTTGTAGTCCCAACAA
CAATTATGCATGTTCACTCAATAATGGTAGAGCTTAAGAAACCCTTAACCAGGGAAGATGTTATTGACATTTTCGAGAAC
ACAACGAGAGTACTCCTTTTTGAAAAGGAGAAGGGATTCGAGAGCACTGCTCAGCTAATAGAATTCGCTAGGGATTTGCA
CAGAGAATGGAACAATCTTTATGAGATTGCAGTGTGGAAAGAAAGCATAAATGTAAAGGGCAATAGACTCTTCTACATAC
AGGCAGTTCATCAAGAGAGTGATGTAATTCCCGAAAATATAGATGCAATAAGGGCAATGTTTGAAATTGCCGAGAAGTGG
GAAAGCATAAAGAAGACAAACAAGAGTCTCGGCATACTTAAATAA

Upstream 100 bases:

>100_bases
TGTGGGTACTCTTCCTAATCAGACAATGCCAGTAAATAGTCACTTTGAGTGAAAACAACCCTTAAAATTTCATTTTATAA
TCTAAATCTGGTGAGGTAAA

Downstream 100 bases:

>100_bases
CTTTTTCCCAACAAATTTTTTAAGCTTTGAATGCTATGTTAGTATGCGTGTGAGACATGGAGAACAACAACATAATGTCC
CAAGTCAAGGAAATTATTGA

Product: glyceraldehyde-3-phosphate dehydrogenase

Products: NA

Alternate protein names: GAPDH; NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase [H]

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MKIKVGINGYGTIGKRVAYAVTKQDDMELIGVTKTKPDFEAYRAKELGIPVYAASEEFLPRFEKAGFEVEGTLNDLLEKV
DIIVDATPGGMGEKNKQLYEKAGVKAIFQGGEKAEVAQVSFVAQANYEAALGKDYVRVVSCNTTGLVRTLNAIKDYVDYV
YAVMIRRAADPNDIKRGPINAIKPSVTIPSHHGPDVQTVIPINIETSAFVVPTTIMHVHSIMVELKKPLTREDVIDIFEN
TTRVLLFEKEKGFESTAQLIEFARDLHREWNNLYEIAVWKESINVKGNRLFYIQAVHQESDVIPENIDAIRAMFEIAEKW
ESIKKTNKSLGILK

Sequences:

>Translated_334_residues
MKIKVGINGYGTIGKRVAYAVTKQDDMELIGVTKTKPDFEAYRAKELGIPVYAASEEFLPRFEKAGFEVEGTLNDLLEKV
DIIVDATPGGMGEKNKQLYEKAGVKAIFQGGEKAEVAQVSFVAQANYEAALGKDYVRVVSCNTTGLVRTLNAIKDYVDYV
YAVMIRRAADPNDIKRGPINAIKPSVTIPSHHGPDVQTVIPINIETSAFVVPTTIMHVHSIMVELKKPLTREDVIDIFEN
TTRVLLFEKEKGFESTAQLIEFARDLHREWNNLYEIAVWKESINVKGNRLFYIQAVHQESDVIPENIDAIRAMFEIAEKW
ESIKKTNKSLGILK
>Mature_334_residues
MKIKVGINGYGTIGKRVAYAVTKQDDMELIGVTKTKPDFEAYRAKELGIPVYAASEEFLPRFEKAGFEVEGTLNDLLEKV
DIIVDATPGGMGEKNKQLYEKAGVKAIFQGGEKAEVAQVSFVAQANYEAALGKDYVRVVSCNTTGLVRTLNAIKDYVDYV
YAVMIRRAADPNDIKRGPINAIKPSVTIPSHHGPDVQTVIPINIETSAFVVPTTIMHVHSIMVELKKPLTREDVIDIFEN
TTRVLLFEKEKGFESTAQLIEFARDLHREWNNLYEIAVWKESINVKGNRLFYIQAVHQESDVIPENIDAIRAMFEIAEKW
ESIKKTNKSLGILK

Specific function: Unknown

COG id: COG0057

COG function: function code G; Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glyceraldehyde-3-phosphate dehydrogenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020831
- InterPro:   IPR020830
- InterPro:   IPR020829
- InterPro:   IPR020828
- InterPro:   IPR006436
- InterPro:   IPR016040 [H]

Pfam domain/function: PF02800 Gp_dh_C; PF00044 Gp_dh_N [H]

EC number: =1.2.1.59 [H]

Molecular weight: Translated: 37436; Mature: 37436

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS00071 GAPDH

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKVGINGYGTIGKRVAYAVTKQDDMELIGVTKTKPDFEAYRAKELGIPVYAASEEFLP
CEEEEECCCCCCHHHHHEEEECCCCCCEEEEEECCCCCHHHHHHHHCCCCEEECCHHHHH
RFEKAGFEVEGTLNDLLEKVDIIVDATPGGMGEKNKQLYEKAGVKAIFQGGEKAEVAQVS
HHHHCCEEEECCHHHHHHHHHEEEECCCCCCCCHHHHHHHHHCCHHHHCCCCCCHHHHEE
FVAQANYEAALGKDYVRVVSCNTTGLVRTLNAIKDYVDYVYAVMIRRAADPNDIKRGPIN
EEECCCCHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
AIKPSVTIPSHHGPDVQTVIPINIETSAFVVPTTIMHVHSIMVELKKPLTREDVIDIFEN
CCCCCEECCCCCCCCCEEEEEEEECCCEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
TTRVLLFEKEKGFESTAQLIEFARDLHREWNNLYEIAVWKESINVKGNRLFYIQAVHQES
CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCEEEEEEEECCCC
DVIPENIDAIRAMFEIAEKWESIKKTNKSLGILK
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKIKVGINGYGTIGKRVAYAVTKQDDMELIGVTKTKPDFEAYRAKELGIPVYAASEEFLP
CEEEEECCCCCCHHHHHEEEECCCCCCEEEEEECCCCCHHHHHHHHCCCCEEECCHHHHH
RFEKAGFEVEGTLNDLLEKVDIIVDATPGGMGEKNKQLYEKAGVKAIFQGGEKAEVAQVS
HHHHCCEEEECCHHHHHHHHHEEEECCCCCCCCHHHHHHHHHCCHHHHCCCCCCHHHHEE
FVAQANYEAALGKDYVRVVSCNTTGLVRTLNAIKDYVDYVYAVMIRRAADPNDIKRGPIN
EEECCCCHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
AIKPSVTIPSHHGPDVQTVIPINIETSAFVVPTTIMHVHSIMVELKKPLTREDVIDIFEN
CCCCCEECCCCCCCCCEEEEEEEECCCEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
TTRVLLFEKEKGFESTAQLIEFARDLHREWNNLYEIAVWKESINVKGNRLFYIQAVHQES
CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCEEEEEEEECCCC
DVIPENIDAIRAMFEIAEKWESIKKTNKSLGILK
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA