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The map label for this gene is rnp1

Identifier: 18978188

GI number: 18978188

Start: 1679841

End: 1680224

Strand: Reverse

Name: rnp1

Synonym: PF1816

Alternate gene names: 18978188

Gene position: 1680224-1679841 (Counterclockwise)

Preceding gene: 18978189

Following gene: 18978187

Centisome position: 88.05

GC content: 40.36

Gene sequence:

>384_bases
ATGTGGAGGAACAGCGAAGAACGGGAGAATAGAACTTCAGGGAGATCACAGGGATCGTATCAAGAAATTATTGGTAGAAC
TTGGATTTTCAGAGGAGCTCATAGAGGTAGAGTAAACAAGAAAAATATAGTATGGCACGAACTAATCGGACTGAAAGTTA
GGGTAGTTAACTCTACCCATCCTGGATATGTTGGGATAGAAGGATACGTAATAGATGAAACAAGAAACATGCTCGTGATA
GCTGGGGAAAACAAAGTTTGGAAAGTTCCCAAGGATGTCTGCATATTTGAGTTTGAAACATGGGATGGGACAAAGATTAA
AATATCTGGTGAAAAATTGGTGGGCAGACCCGAGATGAGACTAAAGAAGAGGTGGAGAAAATGA

Upstream 100 bases:

>100_bases
AAAGGGCAAGATACGGAAAGATAAAGACTATAATTGAAGGAATTGATGAAAAAGAGTTTGACCTCGAGGAGATAGCAAAG
AAACTCAAGGCGAAGTTAGC

Downstream 100 bases:

>100_bases
TGAGAGATATAGGTTTGAGAGTACAGCCTCCCGCTGAAAAATGTGACGATCCAAAGTGCCCTTGGCATGGAAACCTAAAG
ATACACGGTAGGGTATTTGA

Product: ribonuclease P protein component 1

Products: NA

Alternate protein names: RNase P component 1

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MWRNSEERENRTSGRSQGSYQEIIGRTWIFRGAHRGRVNKKNIVWHELIGLKVRVVNSTHPGYVGIEGYVIDETRNMLVI
AGENKVWKVPKDVCIFEFETWDGTKIKISGEKLVGRPEMRLKKRWRK

Sequences:

>Translated_127_residues
MWRNSEERENRTSGRSQGSYQEIIGRTWIFRGAHRGRVNKKNIVWHELIGLKVRVVNSTHPGYVGIEGYVIDETRNMLVI
AGENKVWKVPKDVCIFEFETWDGTKIKISGEKLVGRPEMRLKKRWRK
>Mature_127_residues
MWRNSEERENRTSGRSQGSYQEIIGRTWIFRGAHRGRVNKKNIVWHELIGLKVRVVNSTHPGYVGIEGYVIDETRNMLVI
AGENKVWKVPKDVCIFEFETWDGTKIKISGEKLVGRPEMRLKKRWRK

Specific function: Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends

COG id: COG1588

COG function: function code J; RNase P/RNase MRP subunit p29

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic/archaeal RNase P protein component 1 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNP1_PYRFU (Q8U007)

Other databases:

- EMBL:   AE009950
- RefSeq:   NP_579545.1
- PDB:   2KI7
- PDBsum:   2KI7
- ProteinModelPortal:   Q8U007
- SMR:   Q8U007
- EnsemblBacteria:   EBPYRT00000004944
- GeneID:   1469695
- GenomeReviews:   AE009950_GR
- KEGG:   pfu:PF1816
- NMPDR:   fig|186497.1.peg.1865
- GeneTree:   EBGT00050000023214
- HOGENOM:   HBG704950
- OMA:   ISTKGRV
- ProtClustDB:   PRK03879
- BRENDA:   3.1.26.5
- HAMAP:   MF_00754
- InterPro:   IPR002730
- Gene3D:   G3DSA:2.30.30.210
- SMART:   SM00538

Pfam domain/function: PF01868 UPF0086; SSF101744 RNase_P_Rpp29

EC number: =3.1.26.5

Molecular weight: Translated: 14954; Mature: 14954

Theoretical pI: Translated: 10.83; Mature: 10.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWRNSEERENRTSGRSQGSYQEIIGRTWIFRGAHRGRVNKKNIVWHELIGLKVRVVNSTH
CCCCCCCHHHHCCCCCCCCHHHHHHHHEEEECCCCCCCCCCCEEEEEEECEEEEEEECCC
PGYVGIEGYVIDETRNMLVIAGENKVWKVPKDVCIFEFETWDGTKIKISGEKLVGRPEMR
CCEEEEEEEEEECCCCEEEEECCCCEEECCCCEEEEEEECCCCCEEEECCCEECCCCCHH
LKKRWRK
HHHHCCC
>Mature Secondary Structure
MWRNSEERENRTSGRSQGSYQEIIGRTWIFRGAHRGRVNKKNIVWHELIGLKVRVVNSTH
CCCCCCCHHHHCCCCCCCCHHHHHHHHEEEECCCCCCCCCCCEEEEEEECEEEEEEECCC
PGYVGIEGYVIDETRNMLVIAGENKVWKVPKDVCIFEFETWDGTKIKISGEKLVGRPEMR
CCEEEEEEEEEECCCCEEEEECCCCEEECCCCEEEEEEECCCCCEEEECCCEECCCCCHH
LKKRWRK
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA