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The map label for this gene is rpl19e [H]

Identifier: 18978178

GI number: 18978178

Start: 1675370

End: 1675822

Strand: Reverse

Name: rpl19e [H]

Synonym: PF1806

Alternate gene names: 18978178

Gene position: 1675822-1675370 (Counterclockwise)

Preceding gene: 18978179

Following gene: 18978177

Centisome position: 87.82

GC content: 41.72

Gene sequence:

>453_bases
ATGAACACTCTCAAGATGCAAAGAAGAATAGCTGCTGAAATCCTCAAATGTGGTGAGAATAGAATATGGATTGACCCTGA
GAGAATTGATGATGTTGCTTCTGCTATAACAAGGGAAGATATCAAGAGGCTCATAAAAGAGGGGGTCATCAAAAAGAAAC
CCATTAAGGGGCAGAGCAGATATAGGGCTAAAATTAGGCACGAACAAAAGAAGAAGGGAAGACACAGAGGCCCAGGAAGT
AGAAAGGGTAAAAAGACAGCAAGAATGGGTAAGAAGGAGCTCTGGATTAAGACAATTAGAGCCCTAAGAAAGGAACTTAG
GAAGCTTAAGGCCCAGAAGAAGATTGATAGGAAGACTTACAGAATGCTCTACATTAGGGCTAAGGGTGGACAATTCAAGA
ACAAGCACCAGCTATACCTCTTCCTTGAAGAGCATGGTTTGTTGAAGAAGTGA

Upstream 100 bases:

>100_bases
TTGCACACACCGTAGGAAAGAAGAAGAGAATCGAGATTATAAAGAGAGCTGAGGAACTTGGAATTAAAGTCTTGAACCCC
AGGGTGTGAGGTGAAAAAGT

Downstream 100 bases:

>100_bases
GGTGAAAGAAAATGGCTCACGGTCCTAGGTATAGAGTTCCATTCAGAAGAAGGAGAGAAGGAAAGACAAACTATAGAAAG
AGACTCAAGCTCCTCAAGTC

Product: 50S ribosomal protein L19e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MNTLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSRYRAKIRHEQKKKGRHRGPGS
RKGKKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTYRMLYIRAKGGQFKNKHQLYLFLEEHGLLKK

Sequences:

>Translated_150_residues
MNTLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSRYRAKIRHEQKKKGRHRGPGS
RKGKKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTYRMLYIRAKGGQFKNKHQLYLFLEEHGLLKK
>Mature_150_residues
MNTLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSRYRAKIRHEQKKKGRHRGPGS
RKGKKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTYRMLYIRAKGGQFKNKHQLYLFLEEHGLLKK

Specific function: Unknown

COG id: COG2147

COG function: function code J; Ribosomal protein L19E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L19e family [H]

Homologues:

Organism=Homo sapiens, GI4506609, Length=135, Percent_Identity=42.962962962963, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17508673, Length=127, Percent_Identity=43.3070866141732, Blast_Score=125, Evalue=6e-30,
Organism=Saccharomyces cerevisiae, GI6319559, Length=138, Percent_Identity=37.6811594202899, Blast_Score=97, Evalue=9e-22,
Organism=Saccharomyces cerevisiae, GI6319444, Length=138, Percent_Identity=37.6811594202899, Blast_Score=97, Evalue=9e-22,
Organism=Drosophila melanogaster, GI45552831, Length=142, Percent_Identity=45.7746478873239, Blast_Score=136, Evalue=6e-33,
Organism=Drosophila melanogaster, GI17136322, Length=142, Percent_Identity=45.7746478873239, Blast_Score=136, Evalue=6e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000196
- InterPro:   IPR015972
- InterPro:   IPR015973
- InterPro:   IPR015974 [H]

Pfam domain/function: PF01280 Ribosomal_L19e [H]

EC number: NA

Molecular weight: Translated: 17869; Mature: 17869

Theoretical pI: Translated: 11.60; Mature: 11.60

Prosite motif: PS00526 RIBOSOMAL_L19E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSR
CCHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
YRAKIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTY
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RMLYIRAKGGQFKNKHQLYLFLEEHGLLKK
HEEEEEECCCCCCCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MNTLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSR
CCHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
YRAKIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTY
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RMLYIRAKGGQFKNKHQLYLFLEEHGLLKK
HEEEEEECCCCCCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]