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The map label for this gene is 18978163

Identifier: 18978163

GI number: 18978163

Start: 1664754

End: 1665068

Strand: Direct

Name: 18978163

Synonym: PF1791

Alternate gene names: NA

Gene position: 1664754-1665068 (Clockwise)

Preceding gene: 18978162

Following gene: 18978164

Centisome position: 87.24

GC content: 35.87

Gene sequence:

>315_bases
ATGGAAAAACAGGGTGAAAAAATGAAGAGGTTGGGAAAAGTTTTACACTATGCAAAGCAGGGCTTCCTAATAGTTAGGAC
TAATTGGGTACCATCTCTAAATGATAGAGTGGTAGATAAAAGACTGCAATTTGTGGGAATTGTAAAGGACGTTTTTGGCC
CTGTAAAGATGCCATACGTAGCAATAAAACCAAAAGTTAGTAATCCAGAAATATACGTGGGAGAAGTATTGTATGTAGAT
GAGAGAAAGAGAAAAGAATCTCCTAAAAAGAATAAGGAGAAGAGGATGAAAAAGAAGAAAAGGCTGAATAGATGA

Upstream 100 bases:

>100_bases
GAAGAGATATTTAGAGATATTGAGAAAATACTTCCCCCTGGGTATGCGAGAAGTTTAAAGGAAAAATTCCTAAACATTAA
CATTTAAAATTAGTTTAAAA

Downstream 100 bases:

>100_bases
TGAGAGGGGACCTCTCTGATGAAAGTTGGAGTGCTTAGTGACACCCACATTCCTAAAGCATATTTTCCTCCTCAAATATT
TGAATTTTTAAAGAAGAGAA

Product: H/ACA RNA-protein complex component Gar1

Products: NA

Alternate protein names: Gar1-Like Small Nucleolar Rnp

Number of amino acids: Translated: 104; Mature: 104

Protein sequence:

>104_residues
MEKQGEKMKRLGKVLHYAKQGFLIVRTNWVPSLNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKVSNPEIYVGEVLYVD
ERKRKESPKKNKEKRMKKKKRLNR

Sequences:

>Translated_104_residues
MEKQGEKMKRLGKVLHYAKQGFLIVRTNWVPSLNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKVSNPEIYVGEVLYVD
ERKRKESPKKNKEKRMKKKKRLNR
>Mature_104_residues
MEKQGEKMKRLGKVLHYAKQGFLIVRTNWVPSLNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKVSNPEIYVGEVLYVD
ERKRKESPKKNKEKRMKKKKRLNR

Specific function: Unknown

COG id: COG3277

COG function: function code J; RNA-binding protein involved in rRNA processing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12311; Mature: 12311

Theoretical pI: Translated: 11.07; Mature: 11.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKQGEKMKRLGKVLHYAKQGFLIVRTNWVPSLNDRVVDKRLQFVGIVKDVFGPVKMPYV
CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEE
AIKPKVSNPEIYVGEVLYVDERKRKESPKKNKEKRMKKKKRLNR
EECCCCCCCCEEEEEEEEECCHHHCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MEKQGEKMKRLGKVLHYAKQGFLIVRTNWVPSLNDRVVDKRLQFVGIVKDVFGPVKMPYV
CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEE
AIKPKVSNPEIYVGEVLYVDERKRKESPKKNKEKRMKKKKRLNR
EECCCCCCCCEEEEEEEEECCHHHCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA