BacMap

Definition	Pyrococcus furiosus DSM 3638, complete genome.
Accession	NC_003413
Length	1,908,256

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The map label for this gene is ybhF [H]

Identifier: 18977894

GI number: 18977894

Start: 1421852

End: 1422625

Strand: Reverse

Name: ybhF [H]

Synonym: PF1522

Alternate gene names: 18977894

Gene position: 1422625-1421852 (Counterclockwise)

Preceding gene: 18977895

Following gene: 18977893

Centisome position: 74.55

GC content: 36.43

Gene sequence:

>774_bases
ATGTTTTTAGAGTGCTGGAACGTAAGTAAATCGTACGGAGAAATAAAAGCTCTAGATAATGTCTCATTTGTACTTGATGA
GGGACTGTCATTTATTCTAGGGCCAAATGGAAGTGGAAAGACAACTTTTATCAAAATTATGAGCAATATAATAAGGCCAG
ACTCTGGAAATATAAGGATATTCGGCAGGGACTATCTGGATGTTCCTGCCTCTGAATTGGGTTTTGCGTATGAAAAAATT
GTGTTTCCACCGAACATCAGAGTTAAGGAATACCTTAGTGCCGTCGGACACCTTAGGGGGAATGATAACTCTGATGAAAT
AATAACCCTCTTTGAACTAGATAAAGTTAAAAATAAGAGATTTAAAGAGCTTTCCCAGGGGTTCAAGAGGAGGTTTTTAG
TAGCTTCAGCATTTGTTGGAAATCCTAGGGCTGTATTTCTTGATGAGCCGTTTAGTAACGTTGATATAATAGCTAAGCGA
AGTATGATGAGGACATTTTTGGAGCTAAAGAAAAAGCTCAACATAGTAATTGTCTCTCACGTATTTACAAACATTGAAGA
AATAGATTCCCTTGTGGTTCTTTATCATGGCAAGGTTCTTGCAAATTATAGAGGAAAAGAACTATCTGATTTGACAGGAT
TTAGGGCTATATTTGAGGATGGAAATGTGATAATAAACGATGTGGAAAAAGTGAATTCCCTAATCTCCCAAGGAAAGAAG
CTTGTTAAGATAGAACCAATTTCTATTGAAGATTGGCTGATGAAGATGTTTTAG

Upstream 100 bases:

>100_bases
CAGAGCCTCAATAGCAAAGCTACCGTTAAGTTGCTTCCTAAAGTTAAATTTCCAACTCCTCATGTAGCCCTTATTATAAT
AATTGGCGTGGTGGGGGGAT

Downstream 100 bases:

>100_bases
ATTTACATTTATGTGTAAATACAGACCAAAAAACTTTTAATTTTTGACATTATCATGTCTATAGGTGTGAGAATGAGTGT
GAAAGTAGTTTGTCCCTACT

Product: putative ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MFLECWNVSKSYGEIKALDNVSFVLDEGLSFILGPNGSGKTTFIKIMSNIIRPDSGNIRIFGRDYLDVPASELGFAYEKI
VFPPNIRVKEYLSAVGHLRGNDNSDEIITLFELDKVKNKRFKELSQGFKRRFLVASAFVGNPRAVFLDEPFSNVDIIAKR
SMMRTFLELKKKLNIVIVSHVFTNIEEIDSLVVLYHGKVLANYRGKELSDLTGFRAIFEDGNVIINDVEKVNSLISQGKK
LVKIEPISIEDWLMKMF

Sequences:

>Translated_257_residues
MFLECWNVSKSYGEIKALDNVSFVLDEGLSFILGPNGSGKTTFIKIMSNIIRPDSGNIRIFGRDYLDVPASELGFAYEKI
VFPPNIRVKEYLSAVGHLRGNDNSDEIITLFELDKVKNKRFKELSQGFKRRFLVASAFVGNPRAVFLDEPFSNVDIIAKR
SMMRTFLELKKKLNIVIVSHVFTNIEEIDSLVVLYHGKVLANYRGKELSDLTGFRAIFEDGNVIINDVEKVNSLISQGKK
LVKIEPISIEDWLMKMF
>Mature_257_residues
MFLECWNVSKSYGEIKALDNVSFVLDEGLSFILGPNGSGKTTFIKIMSNIIRPDSGNIRIFGRDYLDVPASELGFAYEKI
VFPPNIRVKEYLSAVGHLRGNDNSDEIITLFELDKVKNKRFKELSQGFKRRFLVASAFVGNPRAVFLDEPFSNVDIIAKR
SMMRTFLELKKKLNIVIVSHVFTNIEEIDSLVVLYHGKVLANYRGKELSDLTGFRAIFEDGNVIINDVEKVNSLISQGKK
LVKIEPISIEDWLMKMF

Specific function: Unknown

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI45446740, Length=206, Percent_Identity=32.0388349514563, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI47078218, Length=206, Percent_Identity=32.0388349514563, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI105990541, Length=181, Percent_Identity=30.939226519337, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI31657092, Length=208, Percent_Identity=28.3653846153846, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI27881501, Length=185, Percent_Identity=29.7297297297297, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI30795238, Length=203, Percent_Identity=29.064039408867, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI27436953, Length=193, Percent_Identity=23.8341968911917, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI21536376, Length=198, Percent_Identity=28.2828282828283, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI153792144, Length=198, Percent_Identity=25.7575757575758, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI27477115, Length=196, Percent_Identity=27.0408163265306, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI27262624, Length=199, Percent_Identity=27.6381909547739, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI27262626, Length=199, Percent_Identity=27.6381909547739, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI6005701, Length=198, Percent_Identity=28.2828282828283, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI150417984, Length=194, Percent_Identity=27.8350515463918, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI116734710, Length=195, Percent_Identity=25.1282051282051, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI87081782, Length=211, Percent_Identity=29.3838862559242, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788450, Length=226, Percent_Identity=29.646017699115, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI87081709, Length=275, Percent_Identity=24, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1790739, Length=236, Percent_Identity=28.8135593220339, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1786319, Length=219, Percent_Identity=29.6803652968037, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787712, Length=215, Percent_Identity=28.3720930232558, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788761, Length=215, Percent_Identity=27.4418604651163, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790467, Length=209, Percent_Identity=25.3588516746411, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI48994943, Length=229, Percent_Identity=25.764192139738, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87081834, Length=222, Percent_Identity=27.4774774774775, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1786563, Length=195, Percent_Identity=24.1025641025641, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789593, Length=215, Percent_Identity=26.9767441860465, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788165, Length=197, Percent_Identity=27.4111675126904, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788897, Length=216, Percent_Identity=28.7037037037037, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87081791, Length=214, Percent_Identity=24.2990654205607, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787370, Length=188, Percent_Identity=25, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI48994883, Length=219, Percent_Identity=26.9406392694064, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87082267, Length=201, Percent_Identity=22.8855721393035, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1787029, Length=207, Percent_Identity=23.6714975845411, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1789032, Length=200, Percent_Identity=25.5, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786703, Length=219, Percent_Identity=23.2876712328767, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786698, Length=212, Percent_Identity=26.8867924528302, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=196, Percent_Identity=33.1632653061224, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71983523, Length=198, Percent_Identity=28.7878787878788, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI71983516, Length=198, Percent_Identity=28.7878787878788, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71983510, Length=198, Percent_Identity=28.7878787878788, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17510237, Length=238, Percent_Identity=26.4705882352941, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI212646699, Length=225, Percent_Identity=28, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI25146777, Length=212, Percent_Identity=27.3584905660377, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71988343, Length=214, Percent_Identity=28.5046728971963, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17538654, Length=179, Percent_Identity=28.4916201117318, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI193208177, Length=205, Percent_Identity=27.3170731707317, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6323959, Length=219, Percent_Identity=26.9406392694064, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI221500365, Length=218, Percent_Identity=28.8990825688073, Blast_Score=94, Evalue=6e-20,
Organism=Drosophila melanogaster, GI116007184, Length=218, Percent_Identity=28.8990825688073, Blast_Score=94, Evalue=6e-20,
Organism=Drosophila melanogaster, GI24666092, Length=265, Percent_Identity=29.4339622641509, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI116007328, Length=189, Percent_Identity=29.1005291005291, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI28574150, Length=189, Percent_Identity=29.1005291005291, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI221512771, Length=209, Percent_Identity=26.3157894736842, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI28573573, Length=224, Percent_Identity=25.8928571428571, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24643674, Length=201, Percent_Identity=28.3582089552239, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28573571, Length=223, Percent_Identity=25.5605381165919, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24648314, Length=211, Percent_Identity=24.6445497630332, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281363262, Length=203, Percent_Identity=25.1231527093596, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 29209; Mature: 29209

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLECWNVSKSYGEIKALDNVSFVLDEGLSFILGPNGSGKTTFIKIMSNIIRPDSGNIRI
CEEEEECCCCCCCCEEECCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEE
FGRDYLDVPASELGFAYEKIVFPPNIRVKEYLSAVGHLRGNDNSDEIITLFELDKVKNKR
EECCCCCCCHHHHCCHHHEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHH
FKELSQGFKRRFLVASAFVGNPRAVFLDEPFSNVDIIAKRSMMRTFLELKKKLNIVIVSH
HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEEEHH
VFTNIEEIDSLVVLYHGKVLANYRGKELSDLTGFRAIFEDGNVIINDVEKVNSLISQGKK
HHHCHHHHHHEEEEECCEEEECCCCCCHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCE
LVKIEPISIEDWLMKMF
EEEEECCCHHHHHHHHC
>Mature Secondary Structure
MFLECWNVSKSYGEIKALDNVSFVLDEGLSFILGPNGSGKTTFIKIMSNIIRPDSGNIRI
CEEEEECCCCCCCCEEECCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEE
FGRDYLDVPASELGFAYEKIVFPPNIRVKEYLSAVGHLRGNDNSDEIITLFELDKVKNKR
EECCCCCCCHHHHCCHHHEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHH
FKELSQGFKRRFLVASAFVGNPRAVFLDEPFSNVDIIAKRSMMRTFLELKKKLNIVIVSH
HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEEEHH
VFTNIEEIDSLVVLYHGKVLANYRGKELSDLTGFRAIFEDGNVIINDVEKVNSLISQGKK
HHHCHHHHHHEEEEECCEEEECCCCCCHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCE
LVKIEPISIEDWLMKMF
EEEEECCCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]