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The map label for this gene is rpl10e [H]

Identifier: 18977651

GI number: 18977651

Start: 1208774

End: 1209319

Strand: Reverse

Name: rpl10e [H]

Synonym: PF1279

Alternate gene names: 18977651

Gene position: 1209319-1208774 (Counterclockwise)

Preceding gene: 18977653

Following gene: 18977650

Centisome position: 63.37

GC content: 45.42

Gene sequence:

>546_bases
ATGGCTCTAAGGCCAGCCAAGATTGACAGGTATGTTGATAAGCCTGCATATACCAGAAGGGAATACATTAGAGGAGCCCC
AGGCCCAAAGATAACCATCTTCGATATGGGAAATCCTGCTGGAGATTTTGAGTTTGAGGTTTCACTTCACACTGCTGAAC
CCGTTCAGATAAGACAGAACGCTCTTGAGGCCGCAAGACAACAGGTTAACAGATACCTACAGAAGAACGTCGGTAGAAGC
AACTACCACTTCAAGATTAGAGTCTACCCATTCCAAGTGCTTAGAGAAAACCCAATGGCTACGGGAAGAAAAGCTGACCG
TTATGGAAACGGTATGAGAAGGCCATTCGGTAAGCCAATAGGACTTGCTGCTAGACTAAAGAAGGATCAGAAGATCCTCT
CAATAAGGGTTAACAGACAGCACCTTAAGTTCGCCATAGAGGGGGCAAGAAGAGCTGCAATGAAGTTCCCATGCAAGTGC
TACTACAGAATATACGACAAGGAAGGAAACGACGTAACAACAAAGATTCTCTCCCAGAGCCTATAA

Upstream 100 bases:

>100_bases
CTTCCCAGCCCCAAGTTAAGTCTTTTTCTCTTTGCCAAAACTTTTATAAGTCTACAAGCTTGTTAGGGAATAGGCTTCAC
TATCACCGGGAGGTGAGAAT

Downstream 100 bases:

>100_bases
CTTTATTACCTTTTTCTCCCCATTTTAATTTGGTGATTAGATGAAGGCTAGGATTATCTATAGAGCTTCTTTTGATGCAG
CACACGCAGTTAAGATTGAA

Product: 50S ribosomal protein L10e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MALRPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMGNPAGDFEFEVSLHTAEPVQIRQNALEAARQQVNRYLQKNVGRS
NYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILSIRVNRQHLKFAIEGARRAAMKFPCKC
YYRIYDKEGNDVTTKILSQSL

Sequences:

>Translated_181_residues
MALRPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMGNPAGDFEFEVSLHTAEPVQIRQNALEAARQQVNRYLQKNVGRS
NYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILSIRVNRQHLKFAIEGARRAAMKFPCKC
YYRIYDKEGNDVTTKILSQSL
>Mature_180_residues
ALRPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMGNPAGDFEFEVSLHTAEPVQIRQNALEAARQQVNRYLQKNVGRSN
YHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILSIRVNRQHLKFAIEGARRAAMKFPCKCY
YRIYDKEGNDVTTKILSQSL

Specific function: Unknown

COG id: COG0197

COG function: function code J; Ribosomal protein L16/L10E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L10e family [H]

Homologues:

Organism=Homo sapiens, GI18152783, Length=172, Percent_Identity=40.6976744186046, Blast_Score=120, Evalue=9e-28,
Organism=Homo sapiens, GI223890243, Length=172, Percent_Identity=40.1162790697674, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17533037, Length=160, Percent_Identity=40, Blast_Score=119, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6323104, Length=160, Percent_Identity=41.875, Blast_Score=116, Evalue=2e-27,
Organism=Drosophila melanogaster, GI221513696, Length=160, Percent_Identity=41.25, Blast_Score=120, Evalue=4e-28,
Organism=Drosophila melanogaster, GI221513692, Length=160, Percent_Identity=41.25, Blast_Score=120, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001197
- InterPro:   IPR016180
- InterPro:   IPR022981
- InterPro:   IPR018255 [H]

Pfam domain/function: PF00252 Ribosomal_L16 [H]

EC number: NA

Molecular weight: Translated: 20936; Mature: 20804

Theoretical pI: Translated: 10.86; Mature: 10.86

Prosite motif: PS01257 RIBOSOMAL_L10E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALRPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMGNPAGDFEFEVSLHTAEPVQIRQN
CCCCCCHHHHHHCCCHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEEECCCCHHHHHH
ALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPI
HHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCCCCCCHHHCCCCCCCCCCCC
GLAARLKKDQKILSIRVNRQHLKFAIEGARRAAMKFPCKCYYRIYDKEGNDVTTKILSQS
CHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHC
L
C
>Mature Secondary Structure 
ALRPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMGNPAGDFEFEVSLHTAEPVQIRQN
CCCCCHHHHHHCCCHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEEECCCCHHHHHH
ALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPI
HHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCCCCCCHHHCCCCCCCCCCCC
GLAARLKKDQKILSIRVNRQHLKFAIEGARRAAMKFPCKCYYRIYDKEGNDVTTKILSQS
CHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHC
L
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]