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The map label for this gene is ybbA [H]

Identifier: 18977480

GI number: 18977480

Start: 1054664

End: 1055878

Strand: Direct

Name: ybbA [H]

Synonym: PF1108

Alternate gene names: 18977480

Gene position: 1054664-1055878 (Clockwise)

Preceding gene: 18977477

Following gene: 18977481

Centisome position: 55.27

GC content: 38.35

Gene sequence:

>1215_bases
ATGAAGAGAATGATCATGTATCTTTCGACAGTTCTTTTGATAGCTGTGGTGAGTGGGTGTATAAGTGAACAAACTCAAAC
CCAAACTTTAGAATCAAATTCTCCTACACAAACAACAACCACAACTTCTCCACAGATAACGGTCACTTTTATAGTCTCTG
TTCCAGAATATACACCTGAAAATGATTCCATATACATAGCTGGAGACTTTAACAACTGGAACCCAAAAGACGAAAGATAT
AAGCTCGTCAAACTTCCAGATGGACGATGGAAAATAACTTTAACATTTCCCTATGGAAAAACGATACAATTTAAGTTTAC
CCGTGGCTCGTGGGAAACTGTGGAAAAAGGAATAAATGGAGAAGAAATACCAAATAGACGATTCACCTTTACCAAGTCTG
GAACTTACGAGTTTAAAGTTCATAACTGGAGAGATTTTGTGGAGAAAAACGTAAAGCACACCATAACTGGAAATGTGATA
ACTTTTGAAATGTTTATTCCTCAATTAAACACGACAAGAAGAATATGGATATATTTACCTCCGGATTATAACTATTCAAC
CAAGAGGTATCCCGTACTGTACATGTTCGACGGTCAAAATCTTTTTGATGCTGCTACTTCTTTTGCTGGAGAATGGGGAG
TTGATGAAGCCTTAGAAAAGCTATACAAAGAAAAGAACTTCTCAATCATAGTAGTTGGGATAGACAATGGAGGAGATAGG
AGAATAGACGAATATGCTCCCTGGGTAAATAGAGATTATAGAAGGGGAGGACTTGGAAACGCTACGGTGAAGTTCATAGT
AGAGACTTTAAAGCCCTATATTGATGCTCACTATAGGACAGATCCAGAAAAAACTGGAATAATGGGATCTTCACTAGGTG
GACTAATGGCTATATATGCAGGCTTTTCATATCCAGAAGTCTTCCGATACGTTGGAGCAATGAGCTCGGCATTCTGGTTT
AATCCCGAGATATATGACTTCGTGAGAGAAGCAAAGAAAGGGCCAGAAAAAATTTACATTGATTGGGGAACGAATGAAGG
GAGAAACCCAAAGGCATTTTCTGAAAGCAATGAGAAAATGGTCAAAATCTTAAAAGAGAAGGGTTATAGGGAGGAATTCA
ACCTTAAAGTTGTGATTGACAAAGGAGGATTACATAACGAGTACTATTGGGGAAAGAGATTCCCTCAAGCCGTTCTGTGG
CTCTTTGAAGAGTAG

Upstream 100 bases:

>100_bases
CCGCGGTAGCCTAGCCTGGTAGTGGCGGCGGACTGTAGATCCGCAGGTCCCCGGTTCAAATCCGGGCCGCGGGACCACCA
AAATTATTCTCGGTGATTAG

Downstream 100 bases:

>100_bases
CTTTTATGCACATATTTAGACCCAACAAAATATTTAAACTTCTCAGTGACTAAATATCACTTGAGGTGACACCATGAGAA
GGAATGCCCAGGTCTTTGCT

Product: putative alpha-dextrin endo-1, 6-alpha-glucosidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MKRMIMYLSTVLLIAVVSGCISEQTQTQTLESNSPTQTTTTTSPQITVTFIVSVPEYTPENDSIYIAGDFNNWNPKDERY
KLVKLPDGRWKITLTFPYGKTIQFKFTRGSWETVEKGINGEEIPNRRFTFTKSGTYEFKVHNWRDFVEKNVKHTITGNVI
TFEMFIPQLNTTRRIWIYLPPDYNYSTKRYPVLYMFDGQNLFDAATSFAGEWGVDEALEKLYKEKNFSIIVVGIDNGGDR
RIDEYAPWVNRDYRRGGLGNATVKFIVETLKPYIDAHYRTDPEKTGIMGSSLGGLMAIYAGFSYPEVFRYVGAMSSAFWF
NPEIYDFVREAKKGPEKIYIDWGTNEGRNPKAFSESNEKMVKILKEKGYREEFNLKVVIDKGGLHNEYYWGKRFPQAVLW
LFEE

Sequences:

>Translated_404_residues
MKRMIMYLSTVLLIAVVSGCISEQTQTQTLESNSPTQTTTTTSPQITVTFIVSVPEYTPENDSIYIAGDFNNWNPKDERY
KLVKLPDGRWKITLTFPYGKTIQFKFTRGSWETVEKGINGEEIPNRRFTFTKSGTYEFKVHNWRDFVEKNVKHTITGNVI
TFEMFIPQLNTTRRIWIYLPPDYNYSTKRYPVLYMFDGQNLFDAATSFAGEWGVDEALEKLYKEKNFSIIVVGIDNGGDR
RIDEYAPWVNRDYRRGGLGNATVKFIVETLKPYIDAHYRTDPEKTGIMGSSLGGLMAIYAGFSYPEVFRYVGAMSSAFWF
NPEIYDFVREAKKGPEKIYIDWGTNEGRNPKAFSESNEKMVKILKEKGYREEFNLKVVIDKGGLHNEYYWGKRFPQAVLW
LFEE
>Mature_404_residues
MKRMIMYLSTVLLIAVVSGCISEQTQTQTLESNSPTQTTTTTSPQITVTFIVSVPEYTPENDSIYIAGDFNNWNPKDERY
KLVKLPDGRWKITLTFPYGKTIQFKFTRGSWETVEKGINGEEIPNRRFTFTKSGTYEFKVHNWRDFVEKNVKHTITGNVI
TFEMFIPQLNTTRRIWIYLPPDYNYSTKRYPVLYMFDGQNLFDAATSFAGEWGVDEALEKLYKEKNFSIIVVGIDNGGDR
RIDEYAPWVNRDYRRGGLGNATVKFIVETLKPYIDAHYRTDPEKTGIMGSSLGGLMAIYAGFSYPEVFRYVGAMSSAFWF
NPEIYDFVREAKKGPEKIYIDWGTNEGRNPKAFSESNEKMVKILKEKGYREEFNLKVVIDKGGLHNEYYWGKRFPQAVLW
LFEE

Specific function: Unknown

COG id: COG2819

COG function: function code R; Predicted hydrolase of the alpha/beta superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000801 [H]

Pfam domain/function: PF00756 Esterase [H]

EC number: NA

Molecular weight: Translated: 46876; Mature: 46876

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51166 CBM20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRMIMYLSTVLLIAVVSGCISEQTQTQTLESNSPTQTTTTTSPQITVTFIVSVPEYTPE
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEECCCCEEEEEEEEECCCCCCC
NDSIYIAGDFNNWNPKDERYKLVKLPDGRWKITLTFPYGKTIQFKFTRGSWETVEKGING
CCEEEEEECCCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCHHHHHCCCCC
EEIPNRRFTFTKSGTYEFKVHNWRDFVEKNVKHTITGNVITFEMFIPQLNTTRRIWIYLP
CCCCCCEEEEEECCEEEEEECCHHHHHHCCCCEEECCCEEEEEEEECCCCCCEEEEEEEC
PDYNYSTKRYPVLYMFDGQNLFDAATSFAGEWGVDEALEKLYKEKNFSIIVVGIDNGGDR
CCCCCCCCCEEEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCC
RIDEYAPWVNRDYRRGGLGNATVKFIVETLKPYIDAHYRTDPEKTGIMGSSLGGLMAIYA
CHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHH
GFSYPEVFRYVGAMSSAFWFNPEIYDFVREAKKGPEKIYIDWGTNEGRNPKAFSESNEKM
CCCHHHHHHHHHHHHHCEECCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHH
VKILKEKGYREEFNLKVVIDKGGLHNEYYWGKRFPQAVLWLFEE
HHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHEEECC
>Mature Secondary Structure
MKRMIMYLSTVLLIAVVSGCISEQTQTQTLESNSPTQTTTTTSPQITVTFIVSVPEYTPE
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEECCCCEEEEEEEEECCCCCCC
NDSIYIAGDFNNWNPKDERYKLVKLPDGRWKITLTFPYGKTIQFKFTRGSWETVEKGING
CCEEEEEECCCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCHHHHHCCCCC
EEIPNRRFTFTKSGTYEFKVHNWRDFVEKNVKHTITGNVITFEMFIPQLNTTRRIWIYLP
CCCCCCEEEEEECCEEEEEECCHHHHHHCCCCEEECCCEEEEEEEECCCCCCEEEEEEEC
PDYNYSTKRYPVLYMFDGQNLFDAATSFAGEWGVDEALEKLYKEKNFSIIVVGIDNGGDR
CCCCCCCCCEEEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCC
RIDEYAPWVNRDYRRGGLGNATVKFIVETLKPYIDAHYRTDPEKTGIMGSSLGGLMAIYA
CHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHH
GFSYPEVFRYVGAMSSAFWFNPEIYDFVREAKKGPEKIYIDWGTNEGRNPKAFSESNEKM
CCCHHHHHHHHHHHHHCEECCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHH
VKILKEKGYREEFNLKVVIDKGGLHNEYYWGKRFPQAVLWLFEE
HHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377 [H]