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The map label for this gene is 18977434

Identifier: 18977434

GI number: 18977434

Start: 1016146

End: 1016418

Strand: Direct

Name: 18977434

Synonym: PF1062

Alternate gene names: NA

Gene position: 1016146-1016418 (Clockwise)

Preceding gene: 33359535

Following gene: 18977435

Centisome position: 53.25

GC content: 43.96

Gene sequence:

>273_bases
ATGGATGTGTTGGAGATGCAAGGTGGAGATATGAGAAGGAATAGAAGAAGGTTTGATGGAGAAAGGAAAGGAAGAAGGTT
TGAAAACTCAGCACCAGTGAAGGTTGGAGAAAGATATAAGGTTAAGATAGAAAGCATGGGCAAAGGAGGAGATGGGATAG
CCAGAATTAAGGGGTTTGTAATCTTTGTCCCCAATACACATGTGGGGGACGAAGTGGAGATCGTTATAAACTCCGTGAAG
AGCAAGTACGCCTTTGCCCAGGTTATAGGGTGA

Upstream 100 bases:

>100_bases
GGTGGTTAAAATAACTTCGTGGCCATAAAAATGTTTATAAACAAACGCTTAGACCATTCTTGGGCAGACACCTCTTCTGG
GGTGTTTGCCCAAACTGTGG

Downstream 100 bases:

>100_bases
AGTTTTTAACTTCCTTTCCCTCTTTTTCTTCATGTTGCACGAAATACCAAAAGAAGAAATTCTCGAAAAGTTGAAAAATA
TAGGGGCAAAGAAAGTTCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 90

Protein sequence:

>90_residues
MDVLEMQGGDMRRNRRRFDGERKGRRFENSAPVKVGERYKVKIESMGKGGDGIARIKGFVIFVPNTHVGDEVEIVINSVK
SKYAFAQVIG

Sequences:

>Translated_90_residues
MDVLEMQGGDMRRNRRRFDGERKGRRFENSAPVKVGERYKVKIESMGKGGDGIARIKGFVIFVPNTHVGDEVEIVINSVK
SKYAFAQVIG
>Mature_90_residues
MDVLEMQGGDMRRNRRRFDGERKGRRFENSAPVKVGERYKVKIESMGKGGDGIARIKGFVIFVPNTHVGDEVEIVINSVK
SKYAFAQVIG

Specific function: Unknown

COG id: COG3269

COG function: function code R; Predicted RNA-binding protein, contains TRAM domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TRAM domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016027
- InterPro:   IPR002792 [H]

Pfam domain/function: PF01938 TRAM [H]

EC number: NA

Molecular weight: Translated: 10130; Mature: 10130

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: PS50926 TRAM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVLEMQGGDMRRNRRRFDGERKGRRFENSAPVKVGERYKVKIESMGKGGDGIARIKGFV
CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEECCEEEEEEEECCCCCCCEEEEEEEE
IFVPNTHVGDEVEIVINSVKSKYAFAQVIG
EECCCCCCCCHHHHHHHHHHHHHHHEEECC
>Mature Secondary Structure
MDVLEMQGGDMRRNRRRFDGERKGRRFENSAPVKVGERYKVKIESMGKGGDGIARIKGFV
CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEECCEEEEEEEECCCCCCCEEEEEEEE
IFVPNTHVGDEVEIVINSVKSKYAFAQVIG
EECCCCCCCCHHHHHHHHHHHHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]