| Definition | Pyrococcus furiosus DSM 3638, complete genome. |
|---|---|
| Accession | NC_003413 |
| Length | 1,908,256 |
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The map label for this gene is lhr [C]
Identifier: 18977423
GI number: 18977423
Start: 1003300
End: 1005900
Strand: Direct
Name: lhr [C]
Synonym: PF1051
Alternate gene names: 18977423
Gene position: 1003300-1005900 (Clockwise)
Preceding gene: 33359534
Following gene: 18977424
Centisome position: 52.58
GC content: 41.48
Gene sequence:
>2601_bases ATGGAGAGGATAAGGTGGGCGAAGAGGGAATATTCAGATGAAGAAATATTCAAAATCCTTGACCCAATAGTTGGGGAATG GTTTAGAAGAAAGTTTAGAACTTTCACCCCTCCTCAGCGCTATGCAGTTATTGAAATCCATAAAGGAGAGAACGTATTGA TTTCATCCCCCACAGGCTCCGGGAAGACTTTATCAGCTTTTCTTTCTATAATTAGTGAACTTATTTCCCTGGGAAGGCAG GGAAAACTTGAAGATAAAATATATTGTGTTTACGTCTCTCCCCTTAGGGCTTTAAACAACGACATAAGGAGAAACTTACA AGAACCTCTTCAGGAAATCTACGAACTTGCGAGAAAGTTGGGAGTTGAAATCCCAGAAATAAGGGTTAGCGTAAGGACAA GCGATACTACAAGTTACGAAAAGAGTAAAATGCTAAAAAAACCTCCACACATCCTGATAACAACTCCGGAAAGCCTTGCA ATTGCCCTTAACGCCCCCAAATTTAGGGAAAAACTGAGAGACGTGAAGTGGGTAATCGTTGATGAAGTCCATGCCCTAGC TGAGAACAAGCGAGGTTCTCATCTAGCTTTAACCCTCGAAAGATTAAGAGAGCTTACTGGAAGGGAATTCGTTAGGATAG GGCTTAGTGCAACTATTCATCCCTTAGAAGAGGTAGCTAAATTTGTATTTGGATTTGACGATAACGGGGAGCCCCGACCA GGGTTGATAGTTGATGTAAGCTTTGCTAAGAAGATAAAAATTAGCGTGGAAAGCGTTGTGGAAGATTTAGTTTATACTCC CGCAAATGTTCTAAGTGAGGCCCTATATAGGAGAATAGGCGAGCTTGTTAAAAACAGAAAGACAACTTTAATCTTTACGA ACACAAGGAGCGGAACTGAAAGGGTTGTATATCACCTAAAGAAGATGTTTCCTGAATGGGCAGACAAAATAGAGGCTCAT CACTCTTCTCTTTCCAGGGAAGTTAGGTTAAACGTTGAAGAAAGACTAAAACGAGGGGAATTGAAGATAATTGTGAGCTC CACTTCTCTGGAACTGGGGATTGATATTGGATCCATAGACCTCGTTATTTTAATTGGCTCTCCGAAGAGCGTTAACAGGG CCCTTCAGAGGATTGGAAGGGCAGGGCACAGACTGCATGAAGTCAGCGAAGGCGTAATTCTTGCTCTAGATAGGGATGAC CTAGTGGAAGTTACTGTTCTTGCTCACAATGCTAGAAATAGAAGGCTAGATAGAATTAAAATCCCAAAGAATCCACTGGA CGTTTTAGTCCAGCACGTCCTGGGAATGGCCCTAGAAAGAGTATGGGAAGTAGAAGAAGCTTACAGAGTAGTTAGGAGAG CATATCCATTTAGAGACCTTCCATTTGAAGATTTCATGAACGTTCTTAGATATTTGGCTGGAGAATATGCTGGGTTAGAG GAAAAAAAGGTGTACGCAAAAATATGGCTCGAAGATGGAAAGTTTGGAAGACGAGGTAAGATGACGAGAGCGATCTATTA TATGAACGTTGGAACGATCCCAGATGAGGCAAAAATTGACGTCTTTACCATGGATATGAAATATATCGGAACAGTTGAAG AAGAGTTTGCGGAGCACCTAATGCCTGGTGATATCTTCGTCCTTGCAGGAAGAACTTATGAGTTCGTCAAGAGTAAGGGG AATAGGATTTACGTTATTCCAAGAGAGGGGGCAAAGCCTACTATCCCCTCCTGGTTCTCTGAAATGCTACCTTTAAGCTT CGATTTGGCTATAGACATTCAAAGATTTAGAAAAGAAGTAAAGAGGTTATTAAATAACAAGAGGGCTAAAACGTTTTTAA TGAGGAAATACGGAATAGACGAAACTACTGCAAATGCCATCCTCTCCTACTTTAGGGAACAAGCTAAATACTCGATAATT CCCGATGACGAAACAGTTCTCGTGGAAGTCGTTAGGGAGGGAAACGTGGTAAAGTACTTCTTCCACACTCTAATAGGAAG AAGGGCCAATGACGCCTTAAGTAGGGCATTTGCATATTTAATAAGTAAGAGGAAGAAATGCAATGTAGGAGTAGCGATTA CTGACAACGGCTTCATGCTAAAGGTTCCCAGGGAGAAAGAGTTGTCTCAGGAGGAGATACTGGAGCTCTTCCGTGTTGAG AACTTAAGGGAGGTTCTAAAGAAAGCTCTGGATAACACAGAGCTTCTTAAAAGGAGGTTCAGACACGTGGCTAACAGGGG TCTTCTAGTACTAAGGAGGTATATGGGAAGAGAAAAAAGCCTAAGCAGGCAACAAATGAATGCACAGACTCTTTTAAACT TTTTGAAAAAGAACTATCCTGATTTTCCCTTATTAAAAGAGGTTTATAGAGAAATTATGGAAGATAAAATGGACATCGGA AACGCGGAGCTCTTCTTGGGTTGGATTAAAGAGGGAAGAATAGAGGTAATTATTAGAGAGCACAAATATCCAAGCCCCTT CGCCTTCAACTTGGAAGTTGCTGGAGCTAGCGATGTCGTTCTCATGGAGGATAGGAGGGAATTAATCAAGGAGCTACACA AGAAGATTATGGCTCTAATTCACGATAAGCTCGAAAGCTAA
Upstream 100 bases:
>100_bases GGGGCCTAGGGGAATTATAGAGGCTTTAAGCGTGGAGGTAGGAGATAGGCTTGAATGGAACAGAATGATTTAAGAAGTAA GTTTGGTTTTGAATTGTGAG
Downstream 100 bases:
>100_bases GGTTTTTTTACTTTCCCAAAATTCTTACTTTGGATAGTTATATTACTGCTGGTTATTATTAGTTGATGAAAATATGTCGA AAGATATATAAAATTGAAGA
Product: ATP-dependent helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 866; Mature: 866
Protein sequence:
>866_residues MERIRWAKREYSDEEIFKILDPIVGEWFRRKFRTFTPPQRYAVIEIHKGENVLISSPTGSGKTLSAFLSIISELISLGRQ GKLEDKIYCVYVSPLRALNNDIRRNLQEPLQEIYELARKLGVEIPEIRVSVRTSDTTSYEKSKMLKKPPHILITTPESLA IALNAPKFREKLRDVKWVIVDEVHALAENKRGSHLALTLERLRELTGREFVRIGLSATIHPLEEVAKFVFGFDDNGEPRP GLIVDVSFAKKIKISVESVVEDLVYTPANVLSEALYRRIGELVKNRKTTLIFTNTRSGTERVVYHLKKMFPEWADKIEAH HSSLSREVRLNVEERLKRGELKIIVSSTSLELGIDIGSIDLVILIGSPKSVNRALQRIGRAGHRLHEVSEGVILALDRDD LVEVTVLAHNARNRRLDRIKIPKNPLDVLVQHVLGMALERVWEVEEAYRVVRRAYPFRDLPFEDFMNVLRYLAGEYAGLE EKKVYAKIWLEDGKFGRRGKMTRAIYYMNVGTIPDEAKIDVFTMDMKYIGTVEEEFAEHLMPGDIFVLAGRTYEFVKSKG NRIYVIPREGAKPTIPSWFSEMLPLSFDLAIDIQRFRKEVKRLLNNKRAKTFLMRKYGIDETTANAILSYFREQAKYSII PDDETVLVEVVREGNVVKYFFHTLIGRRANDALSRAFAYLISKRKKCNVGVAITDNGFMLKVPREKELSQEEILELFRVE NLREVLKKALDNTELLKRRFRHVANRGLLVLRRYMGREKSLSRQQMNAQTLLNFLKKNYPDFPLLKEVYREIMEDKMDIG NAELFLGWIKEGRIEVIIREHKYPSPFAFNLEVAGASDVVLMEDRRELIKELHKKIMALIHDKLES
Sequences:
>Translated_866_residues MERIRWAKREYSDEEIFKILDPIVGEWFRRKFRTFTPPQRYAVIEIHKGENVLISSPTGSGKTLSAFLSIISELISLGRQ GKLEDKIYCVYVSPLRALNNDIRRNLQEPLQEIYELARKLGVEIPEIRVSVRTSDTTSYEKSKMLKKPPHILITTPESLA IALNAPKFREKLRDVKWVIVDEVHALAENKRGSHLALTLERLRELTGREFVRIGLSATIHPLEEVAKFVFGFDDNGEPRP GLIVDVSFAKKIKISVESVVEDLVYTPANVLSEALYRRIGELVKNRKTTLIFTNTRSGTERVVYHLKKMFPEWADKIEAH HSSLSREVRLNVEERLKRGELKIIVSSTSLELGIDIGSIDLVILIGSPKSVNRALQRIGRAGHRLHEVSEGVILALDRDD LVEVTVLAHNARNRRLDRIKIPKNPLDVLVQHVLGMALERVWEVEEAYRVVRRAYPFRDLPFEDFMNVLRYLAGEYAGLE EKKVYAKIWLEDGKFGRRGKMTRAIYYMNVGTIPDEAKIDVFTMDMKYIGTVEEEFAEHLMPGDIFVLAGRTYEFVKSKG NRIYVIPREGAKPTIPSWFSEMLPLSFDLAIDIQRFRKEVKRLLNNKRAKTFLMRKYGIDETTANAILSYFREQAKYSII PDDETVLVEVVREGNVVKYFFHTLIGRRANDALSRAFAYLISKRKKCNVGVAITDNGFMLKVPREKELSQEEILELFRVE NLREVLKKALDNTELLKRRFRHVANRGLLVLRRYMGREKSLSRQQMNAQTLLNFLKKNYPDFPLLKEVYREIMEDKMDIG NAELFLGWIKEGRIEVIIREHKYPSPFAFNLEVAGASDVVLMEDRRELIKELHKKIMALIHDKLES >Mature_866_residues MERIRWAKREYSDEEIFKILDPIVGEWFRRKFRTFTPPQRYAVIEIHKGENVLISSPTGSGKTLSAFLSIISELISLGRQ GKLEDKIYCVYVSPLRALNNDIRRNLQEPLQEIYELARKLGVEIPEIRVSVRTSDTTSYEKSKMLKKPPHILITTPESLA IALNAPKFREKLRDVKWVIVDEVHALAENKRGSHLALTLERLRELTGREFVRIGLSATIHPLEEVAKFVFGFDDNGEPRP GLIVDVSFAKKIKISVESVVEDLVYTPANVLSEALYRRIGELVKNRKTTLIFTNTRSGTERVVYHLKKMFPEWADKIEAH HSSLSREVRLNVEERLKRGELKIIVSSTSLELGIDIGSIDLVILIGSPKSVNRALQRIGRAGHRLHEVSEGVILALDRDD LVEVTVLAHNARNRRLDRIKIPKNPLDVLVQHVLGMALERVWEVEEAYRVVRRAYPFRDLPFEDFMNVLRYLAGEYAGLE EKKVYAKIWLEDGKFGRRGKMTRAIYYMNVGTIPDEAKIDVFTMDMKYIGTVEEEFAEHLMPGDIFVLAGRTYEFVKSKG NRIYVIPREGAKPTIPSWFSEMLPLSFDLAIDIQRFRKEVKRLLNNKRAKTFLMRKYGIDETTANAILSYFREQAKYSII PDDETVLVEVVREGNVVKYFFHTLIGRRANDALSRAFAYLISKRKKCNVGVAITDNGFMLKVPREKELSQEEILELFRVE NLREVLKKALDNTELLKRRFRHVANRGLLVLRRYMGREKSLSRQQMNAQTLLNFLKKNYPDFPLLKEVYREIMEDKMDIG NAELFLGWIKEGRIEVIIREHKYPSPFAFNLEVAGASDVVLMEDRRELIKELHKKIMALIHDKLES
Specific function: Unknown
COG id: COG1201
COG function: function code R; Lhr-like helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI76880486, Length=573, Percent_Identity=23.2111692844677, Blast_Score=87, Evalue=1e-16, Organism=Homo sapiens, GI40217847, Length=431, Percent_Identity=23.4338747099768, Blast_Score=80, Evalue=7e-15, Organism=Homo sapiens, GI169218225, Length=431, Percent_Identity=23.2018561484919, Blast_Score=79, Evalue=2e-14, Organism=Homo sapiens, GI284005309, Length=408, Percent_Identity=24.7549019607843, Blast_Score=79, Evalue=3e-14, Organism=Homo sapiens, GI38569503, Length=376, Percent_Identity=25, Blast_Score=75, Evalue=3e-13, Organism=Homo sapiens, GI38569505, Length=357, Percent_Identity=24.9299719887955, Blast_Score=75, Evalue=4e-13, Organism=Escherichia coli, GI1787942, Length=901, Percent_Identity=31.8534961154273, Blast_Score=386, Evalue=1e-108, Organism=Caenorhabditis elegans, GI115532548, Length=421, Percent_Identity=21.8527315914489, Blast_Score=74, Evalue=3e-13, Organism=Caenorhabditis elegans, GI115532546, Length=408, Percent_Identity=21.8137254901961, Blast_Score=73, Evalue=6e-13, Organism=Saccharomyces cerevisiae, GI6320497, Length=396, Percent_Identity=27.2727272727273, Blast_Score=111, Evalue=5e-25, Organism=Saccharomyces cerevisiae, GI9755332, Length=466, Percent_Identity=26.6094420600858, Blast_Score=95, Evalue=4e-20, Organism=Saccharomyces cerevisiae, GI6321020, Length=442, Percent_Identity=24.6606334841629, Blast_Score=86, Evalue=3e-17, Organism=Saccharomyces cerevisiae, GI6321710, Length=369, Percent_Identity=24.390243902439, Blast_Score=72, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6321963, Length=383, Percent_Identity=22.7154046997389, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI24647182, Length=366, Percent_Identity=23.4972677595628, Blast_Score=80, Evalue=5e-15, Organism=Drosophila melanogaster, GI28574898, Length=403, Percent_Identity=23.5732009925558, Blast_Score=71, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR013701 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR017170 [H]
Pfam domain/function: PF00270 DEAD; PF08494 DEAD_assoc; PF00271 Helicase_C [H]
EC number: 3.6.1.-
Molecular weight: Translated: 100238; Mature: 100238
Theoretical pI: Translated: 9.89; Mature: 9.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERIRWAKREYSDEEIFKILDPIVGEWFRRKFRTFTPPQRYAVIEIHKGENVLISSPTGS CCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEECCCCC GKTLSAFLSIISELISLGRQGKLEDKIYCVYVSPLRALNNDIRRNLQEPLQEIYELARKL CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH GVEIPEIRVSVRTSDTTSYEKSKMLKKPPHILITTPESLAIALNAPKFREKLRDVKWVIV CCCCCCEEEEEEECCCCHHHHHHHHCCCCCEEEECCCCEEEEECCHHHHHHHHHHHHHHH DEVHALAENKRGSHLALTLERLRELTGREFVRIGLSATIHPLEEVAKFVFGFDDNGEPRP HHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCC GLIVDVSFAKKIKISVESVVEDLVYTPANVLSEALYRRIGELVKNRKTTLIFTNTRSGTE CEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHH RVVYHLKKMFPEWADKIEAHHSSLSREVRLNVEERLKRGELKIIVSSTSLELGIDIGSID HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHCCCCEEEEEEECCEEEEEEECCEE LVILIGSPKSVNRALQRIGRAGHRLHEVSEGVILALDRDDLVEVTVLAHNARNRRLDRIK EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEEEECCCCCCCCEEE IPKNPLDVLVQHVLGMALERVWEVEEAYRVVRRAYPFRDLPFEDFMNVLRYLAGEYAGLE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC EKKVYAKIWLEDGKFGRRGKMTRAIYYMNVGTIPDEAKIDVFTMDMKYIGTVEEEFAEHL HHEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECHHHHCCHHHHHHHHC MPGDIFVLAGRTYEFVKSKGNRIYVIPREGAKPTIPSWFSEMLPLSFDLAIDIQRFRKEV CCCCEEEEECCCHHHHHCCCCEEEEEECCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH KRLLNNKRAKTFLMRKYGIDETTANAILSYFREQAKYSIIPDDETVLVEVVREGNVVKYF HHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHCCCCHHHH FHTLIGRRANDALSRAFAYLISKRKKCNVGVAITDNGFMLKVPREKELSQEEILELFRVE HHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCHHCCCHHHHHHHHHHH NLREVLKKALDNTELLKRRFRHVANRGLLVLRRYMGREKSLSRQQMNAQTLLNFLKKNYP HHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCHHHHHHHHHCCCC DFPLLKEVYREIMEDKMDIGNAELFLGWIKEGRIEVIIREHKYPSPFAFNLEVAGASDVV CCHHHHHHHHHHHHHHHCCCCHHEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEE LMEDRRELIKELHKKIMALIHDKLES EEHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MERIRWAKREYSDEEIFKILDPIVGEWFRRKFRTFTPPQRYAVIEIHKGENVLISSPTGS CCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEECCCCC GKTLSAFLSIISELISLGRQGKLEDKIYCVYVSPLRALNNDIRRNLQEPLQEIYELARKL CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH GVEIPEIRVSVRTSDTTSYEKSKMLKKPPHILITTPESLAIALNAPKFREKLRDVKWVIV CCCCCCEEEEEEECCCCHHHHHHHHCCCCCEEEECCCCEEEEECCHHHHHHHHHHHHHHH DEVHALAENKRGSHLALTLERLRELTGREFVRIGLSATIHPLEEVAKFVFGFDDNGEPRP HHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCC GLIVDVSFAKKIKISVESVVEDLVYTPANVLSEALYRRIGELVKNRKTTLIFTNTRSGTE CEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHH RVVYHLKKMFPEWADKIEAHHSSLSREVRLNVEERLKRGELKIIVSSTSLELGIDIGSID HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHCCCCEEEEEEECCEEEEEEECCEE LVILIGSPKSVNRALQRIGRAGHRLHEVSEGVILALDRDDLVEVTVLAHNARNRRLDRIK EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEEEECCCCCCCCEEE IPKNPLDVLVQHVLGMALERVWEVEEAYRVVRRAYPFRDLPFEDFMNVLRYLAGEYAGLE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC EKKVYAKIWLEDGKFGRRGKMTRAIYYMNVGTIPDEAKIDVFTMDMKYIGTVEEEFAEHL HHEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECHHHHCCHHHHHHHHC MPGDIFVLAGRTYEFVKSKGNRIYVIPREGAKPTIPSWFSEMLPLSFDLAIDIQRFRKEV CCCCEEEEECCCHHHHHCCCCEEEEEECCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH KRLLNNKRAKTFLMRKYGIDETTANAILSYFREQAKYSIIPDDETVLVEVVREGNVVKYF HHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHCCCCHHHH FHTLIGRRANDALSRAFAYLISKRKKCNVGVAITDNGFMLKVPREKELSQEEILELFRVE HHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCHHCCCHHHHHHHHHHH NLREVLKKALDNTELLKRRFRHVANRGLLVLRRYMGREKSLSRQQMNAQTLLNFLKKNYP HHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCHHHHHHHHHCCCC DFPLLKEVYREIMEDKMDIGNAELFLGWIKEGRIEVIIREHKYPSPFAFNLEVAGASDVV CCHHHHHHHHHHHHHHHCCCCHHEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEE LMEDRRELIKELHKKIMALIHDKLES EEHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on acid anhydrides [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]