Click here to switch to the map view.

The map label for this gene is ycfH [C]

Identifier: 18977231

GI number: 18977231

Start: 834030

End: 834788

Strand: Reverse

Name: ycfH [C]

Synonym: PF0859

Alternate gene names: 18977231

Gene position: 834788-834030 (Counterclockwise)

Preceding gene: 33359518

Following gene: 18977230

Centisome position: 43.75

GC content: 42.16

Gene sequence:

>759_bases
ATGATAGATGCTCACGCTCACATCGAGTTCTTCAAGAAAAATCAGGAAGAGATAATAGAGGAGGCAAAAAGAAAGCTTAG
GGGAGTAGTTGACTCCATAACGGAGTACAGAAAGACTCACGTGTGGAAAAGCTGGGAGTTGTTGAAGGATTATTTTGACT
TCATATTCCCCACCCTGGGGTATCATCCCAACGAAGCTAGGAGGGGGAACTGGGAAAAGGTAAGAAAAGTGGAGGATTTT
ATACTTAAACACCAGAAGGAAATATTTGGAATCGGGGAGATAGGCCTTGACTACTATCACGCAAAGACCAAAGCTGAGAG
AGATGCTCAGAGAGAAATCTTTGTTCACTTCTTAGAGCTGGCAAAAGAGCTGAACCTTCCAGTTGTAATTCATGCCCGAG
AAGCGGAGAAAGAGGCATTGGAAATCATAAACAGGTATGACATCCCCTCTTACTTTCACTCTTACACAGGTTCAGTTGAA
GTGGCTAGGGAAATCGTTGATGGCGGGCACATACTAGGAATAAGCACAGGCATAGTCTTTATCCCAGAAGTCCGAGAAGT
GGCCAAAAACATTGAGATAGAGTATTTGGTTGTTGAGACAGACGCTCCATACATGAGTCCTTACAAGGGGATTAGGAATA
AACCAATATTTGTCGAAGTTGCCATAGAGGAATTGGCAAAAATTAAAGGAATGGATAAGACAGAAGTTGAGGCAGTTACA
GAGGTAAATACAATAAAGTTCTTTTCTCTTCCGCTATAA

Upstream 100 bases:

>100_bases
GGACAACCCCTATCAATGGTTTCTTACTAAAATCCAAGTCCTTCATGGTCACTCCCAACACTTATAACTCCAAGTTAGGT
TAAGGTTTTCGGTGAGATTC

Downstream 100 bases:

>100_bases
TGTTTTTTCAAACCTCTAAATTTTTATTTTCGGACAAAATCTTTTTATACCTCCCCTTTGTAAATTAGGTCGACCTAATA
TTTTGAGGGGGTGCTAAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MIDAHAHIEFFKKNQEEIIEEAKRKLRGVVDSITEYRKTHVWKSWELLKDYFDFIFPTLGYHPNEARRGNWEKVRKVEDF
ILKHQKEIFGIGEIGLDYYHAKTKAERDAQREIFVHFLELAKELNLPVVIHAREAEKEALEIINRYDIPSYFHSYTGSVE
VAREIVDGGHILGISTGIVFIPEVREVAKNIEIEYLVVETDAPYMSPYKGIRNKPIFVEVAIEELAKIKGMDKTEVEAVT
EVNTIKFFSLPL

Sequences:

>Translated_252_residues
MIDAHAHIEFFKKNQEEIIEEAKRKLRGVVDSITEYRKTHVWKSWELLKDYFDFIFPTLGYHPNEARRGNWEKVRKVEDF
ILKHQKEIFGIGEIGLDYYHAKTKAERDAQREIFVHFLELAKELNLPVVIHAREAEKEALEIINRYDIPSYFHSYTGSVE
VAREIVDGGHILGISTGIVFIPEVREVAKNIEIEYLVVETDAPYMSPYKGIRNKPIFVEVAIEELAKIKGMDKTEVEAVT
EVNTIKFFSLPL
>Mature_252_residues
MIDAHAHIEFFKKNQEEIIEEAKRKLRGVVDSITEYRKTHVWKSWELLKDYFDFIFPTLGYHPNEARRGNWEKVRKVEDF
ILKHQKEIFGIGEIGLDYYHAKTKAERDAQREIFVHFLELAKELNLPVVIHAREAEKEALEIINRYDIPSYFHSYTGSVE
VAREIVDGGHILGISTGIVFIPEVREVAKNIEIEYLVVETDAPYMSPYKGIRNKPIFVEVAIEELAKIKGMDKTEVEAVT
EVNTIKFFSLPL

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=259, Percent_Identity=27.027027027027, Blast_Score=122, Evalue=3e-28,
Organism=Homo sapiens, GI110349734, Length=259, Percent_Identity=27.027027027027, Blast_Score=119, Evalue=3e-27,
Organism=Homo sapiens, GI226061853, Length=266, Percent_Identity=26.3157894736842, Blast_Score=117, Evalue=9e-27,
Organism=Homo sapiens, GI226061614, Length=253, Percent_Identity=26.4822134387352, Blast_Score=111, Evalue=6e-25,
Organism=Homo sapiens, GI226061595, Length=227, Percent_Identity=24.6696035242291, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI225903424, Length=275, Percent_Identity=28, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI225903439, Length=228, Percent_Identity=25.8771929824561, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI14042943, Length=226, Percent_Identity=26.1061946902655, Blast_Score=73, Evalue=2e-13,
Organism=Escherichia coli, GI1787342, Length=265, Percent_Identity=26.7924528301887, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI48994985, Length=254, Percent_Identity=27.5590551181102, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI87082439, Length=259, Percent_Identity=24.7104247104247, Blast_Score=92, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI71980746, Length=259, Percent_Identity=25.0965250965251, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17559024, Length=282, Percent_Identity=26.241134751773, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24648690, Length=249, Percent_Identity=28.1124497991968, Blast_Score=81, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29351; Mature: 29351

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDAHAHIEFFKKNQEEIIEEAKRKLRGVVDSITEYRKTHVWKSWELLKDYFDFIFPTLG
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YHPNEARRGNWEKVRKVEDFILKHQKEIFGIGEIGLDYYHAKTKAERDAQREIFVHFLEL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKELNLPVVIHAREAEKEALEIINRYDIPSYFHSYTGSVEVAREIVDGGHILGISTGIVF
HHHCCCCEEEECCHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHCCCEEEEECCCEEE
IPEVREVAKNIEIEYLVVETDAPYMSPYKGIRNKPIFVEVAIEELAKIKGMDKTEVEAVT
CHHHHHHHHCCCEEEEEEECCCCCCCHHHCCCCCCEEEEHHHHHHHHHCCCCHHHHHHHH
EVNTIKFFSLPL
HHCEEEEEECCC
>Mature Secondary Structure
MIDAHAHIEFFKKNQEEIIEEAKRKLRGVVDSITEYRKTHVWKSWELLKDYFDFIFPTLG
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YHPNEARRGNWEKVRKVEDFILKHQKEIFGIGEIGLDYYHAKTKAERDAQREIFVHFLEL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKELNLPVVIHAREAEKEALEIINRYDIPSYFHSYTGSVEVAREIVDGGHILGISTGIVF
HHHCCCCEEEECCHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHCCCEEEEECCCEEE
IPEVREVAKNIEIEYLVVETDAPYMSPYKGIRNKPIFVEVAIEELAKIKGMDKTEVEAVT
CHHHHHHHHCCCEEEEEEECCCCCCCHHHCCCCCCEEEEHHHHHHHHHCCCCHHHHHHHH
EVNTIKFFSLPL
HHCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]