Click here to switch to the map view.

The map label for this gene is 18976992

Identifier: 18976992

GI number: 18976992

Start: 638313

End: 638639

Strand: Direct

Name: 18976992

Synonym: PF0620

Alternate gene names: NA

Gene position: 638313-638639 (Clockwise)

Preceding gene: 18976989

Following gene: 18976993

Centisome position: 33.45

GC content: 44.65

Gene sequence:

>327_bases
ATGCCCAGGTGGGGAAGAGGTAGAAGAAGAAAGATGAGAATGATAGAATTCATACCCTATGCAAGGCACTTTTACCCAGC
ACTTCCTAGGTTTGGCCCTCCAAAACCCCCTATAATAATGACGTATGAAGAGTTCGAGGCATTGAGGTTGGTGGACTATG
AAGGACTAACCCAGGAAGAGGCAGGTAAAAGAATGGGAGTTTCAAGAGGAACGATATGGAGGGCGTTAACATCTGCAAGA
AAGAAGGTTGCCCAAATGCTAGTGGAGGGCAGAGAGCTCATAATCTTACCCCAAGGAAATGAAGTTATAAAGAGTGATGA
AGAATGA

Upstream 100 bases:

>100_bases
CCTTCTGGAATTCTGAAAAGATAAACTCTTCCAGGAACGAGCATTTAAACCACCATAAAAAGCTATAAAAGTTGGCCTTT
AAAATTTCCTATTGATAGCG

Downstream 100 bases:

>100_bases
AGAAGGCAATAATTTTGCTTTTACTCCTCTTATTACCAGTAGTCTCAGCTCAAAAGGTTAAAGTTGTTGTATACGATGAC
GGATATTGTTTAGTTAAGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 107

Protein sequence:

>108_residues
MPRWGRGRRRKMRMIEFIPYARHFYPALPRFGPPKPPIIMTYEEFEALRLVDYEGLTQEEAGKRMGVSRGTIWRALTSAR
KKVAQMLVEGRELIILPQGNEVIKSDEE

Sequences:

>Translated_108_residues
MPRWGRGRRRKMRMIEFIPYARHFYPALPRFGPPKPPIIMTYEEFEALRLVDYEGLTQEEAGKRMGVSRGTIWRALTSAR
KKVAQMLVEGRELIILPQGNEVIKSDEE
>Mature_107_residues
PRWGRGRRRKMRMIEFIPYARHFYPALPRFGPPKPPIIMTYEEFEALRLVDYEGLTQEEAGKRMGVSRGTIWRALTSARK
KVAQMLVEGRELIILPQGNEVIKSDEE

Specific function: Unknown

COG id: COG1342

COG function: function code R; Predicted DNA-binding proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0251 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y620_PYRFU (Q8U352)

Other databases:

- EMBL:   AE009950
- RefSeq:   NP_578349.1
- ProteinModelPortal:   Q8U352
- EnsemblBacteria:   EBPYRT00000004845
- GeneID:   1468464
- GenomeReviews:   AE009950_GR
- KEGG:   pfu:PF0620
- NMPDR:   fig|186497.1.peg.635
- GeneTree:   EBGT00050000023129
- HOGENOM:   HBG513201
- OMA:   YEGLTQE
- ProtClustDB:   PRK04217
- HAMAP:   MF_00674
- InterPro:   IPR013324
- InterPro:   IPR002852

Pfam domain/function: PF02001 DUF134; SSF88659 Sigma_r3_r4

EC number: NA

Molecular weight: Translated: 12647; Mature: 12516

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRWGRGRRRKMRMIEFIPYARHFYPALPRFGPPKPPIIMTYEEFEALRLVDYEGLTQEE
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHCHHHCCCCCCCCHHH
AGKRMGVSRGTIWRALTSARKKVAQMLVEGRELIILPQGNEVIKSDEE
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure 
PRWGRGRRRKMRMIEFIPYARHFYPALPRFGPPKPPIIMTYEEFEALRLVDYEGLTQEE
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHCHHHCCCCCCCCHHH
AGKRMGVSRGTIWRALTSARKKVAQMLVEGRELIILPQGNEVIKSDEE
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA