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The map label for this gene is ymdB [C]

Identifier: 161484708

GI number: 161484708

Start: 1435432

End: 1435992

Strand: Reverse

Name: ymdB [C]

Synonym: PF1536

Alternate gene names: 161484708

Gene position: 1435992-1435432 (Counterclockwise)

Preceding gene: 18977909

Following gene: 18977907

Centisome position: 75.25

GC content: 41.71

Gene sequence:

>561_bases
GTGATTACCATGATCAAGGTTGTTAAAGGGGATATTACAAAATTTAGAGCTGAGGCAATTGTCAATGCTGCTAACAAGTA
TCTAGAGCATGGAGGGGGAGTAGCTTATGCAATTGCAAAAGCTGCTGCTGGAGACGTTAGGGAGTACATCAGAATAAGCA
AGGAAGCTATGCGAGAGCAACTGGGGAAAGATTGGATTGATCATGGTGAAGTTGTAGTCACCCCACCCCTTCAATTAGAA
AAGAATGGAGTTAAATACGTGATTCACACCGTTGGTCCCTATTGTGGAGGTTCCTGGGACGAAGATAAAAAGAGCAAATT
AAAGTTGGCTATACTGGGAGCTTTGAAAAAGGCTGATGAACTTGGGGTTAAAAGCATAGCATTTCCAGCAATAAGTGCTG
GAATCTATGGTTGTCCTTTGGAGAAGGTTGTTGAGACTTTTGTAGAAGTAGTTAAGGAATTCCTGCCTTCCGCTAAATCC
CTAAGAGAAGTGTTTCTAGTCTTGTACTCTCAAGAGGATTACGAAAAAGCTCTAAAAATAGTAGGGCAAGGAGGTGTTTG
A

Upstream 100 bases:

>100_bases
CTTCGAGATGTTAGTATTCTGAACAACTCGAAAGTAATTTGCGTTGGAGATTTAAGCTGGCTTTCAAAAAAAGAGCTTGC
CATGTTGGAAAAAATAATGG

Downstream 100 bases:

>100_bases
AAATGGTTAAAGTGGAGAATTCAATTAAGAAAAAAATTGAGAAAAAGCTTCCTGAAAACTTAAAGAAACTCGCAGAATTG
GCCTACAACTATTGGTGGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MITMIKVVKGDITKFRAEAIVNAANKYLEHGGGVAYAIAKAAAGDVREYIRISKEAMREQLGKDWIDHGEVVVTPPLQLE
KNGVKYVIHTVGPYCGGSWDEDKKSKLKLAILGALKKADELGVKSIAFPAISAGIYGCPLEKVVETFVEVVKEFLPSAKS
LREVFLVLYSQEDYEKALKIVGQGGV

Sequences:

>Translated_186_residues
MITMIKVVKGDITKFRAEAIVNAANKYLEHGGGVAYAIAKAAAGDVREYIRISKEAMREQLGKDWIDHGEVVVTPPLQLE
KNGVKYVIHTVGPYCGGSWDEDKKSKLKLAILGALKKADELGVKSIAFPAISAGIYGCPLEKVVETFVEVVKEFLPSAKS
LREVFLVLYSQEDYEKALKIVGQGGV
>Mature_186_residues
MITMIKVVKGDITKFRAEAIVNAANKYLEHGGGVAYAIAKAAAGDVREYIRISKEAMREQLGKDWIDHGEVVVTPPLQLE
KNGVKYVIHTVGPYCGGSWDEDKKSKLKLAILGALKKADELGVKSIAFPAISAGIYGCPLEKVVETFVEVVKEFLPSAKS
LREVFLVLYSQEDYEKALKIVGQGGV

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=169, Percent_Identity=34.3195266272189, Blast_Score=78, Evalue=3e-15,
Organism=Homo sapiens, GI226371710, Length=175, Percent_Identity=34.8571428571429, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI226371706, Length=175, Percent_Identity=34.8571428571429, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI13569840, Length=151, Percent_Identity=34.4370860927152, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI226371718, Length=175, Percent_Identity=34.8571428571429, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI226371716, Length=175, Percent_Identity=34.8571428571429, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI226371714, Length=175, Percent_Identity=34.8571428571429, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI226371712, Length=175, Percent_Identity=34.8571428571429, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI154813199, Length=182, Percent_Identity=32.967032967033, Blast_Score=75, Evalue=5e-14,
Organism=Escherichia coli, GI1787283, Length=186, Percent_Identity=37.0967741935484, Blast_Score=92, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17538214, Length=179, Percent_Identity=34.6368715083799, Blast_Score=91, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 20283; Mature: 20283

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITMIKVVKGDITKFRAEAIVNAANKYLEHGGGVAYAIAKAAAGDVREYIRISKEAMREQ
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGKDWIDHGEVVVTPPLQLEKNGVKYVIHTVGPYCGGSWDEDKKSKLKLAILGALKKADE
HCHHHHCCCCEEECCCCEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LGVKSIAFPAISAGIYGCPLEKVVETFVEVVKEFLPSAKSLREVFLVLYSQEDYEKALKI
HCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHH
VGQGGV
HCCCCC
>Mature Secondary Structure
MITMIKVVKGDITKFRAEAIVNAANKYLEHGGGVAYAIAKAAAGDVREYIRISKEAMREQ
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGKDWIDHGEVVVTPPLQLEKNGVKYVIHTVGPYCGGSWDEDKKSKLKLAILGALKKADE
HCHHHHCCCCEEECCCCEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LGVKSIAFPAISAGIYGCPLEKVVETFVEVVKEFLPSAKSLREVFLVLYSQEDYEKALKI
HCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHH
VGQGGV
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA