Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

Click here to switch to the map view.

The map label for this gene is spo0J [H]

Identifier: 18311633

GI number: 18311633

Start: 3022236

End: 3023096

Strand: Reverse

Name: spo0J [H]

Synonym: CPE2651

Alternate gene names: 18311633

Gene position: 3023096-3022236 (Counterclockwise)

Preceding gene: 18311634

Following gene: 18311632

Centisome position: 99.73

GC content: 27.18

Gene sequence:

>861_bases
ATGGCTAAAAAATTTGGTTTAGGAAAAGGATTAGGAGCCTTAATACCAGAAGATAATATTAAGGAAGAAAAAAAAGAAAA
AGGTGGAATAATAAATATTGAGCTTAAAGATATAAAAGCTAATAAAAAACAACCTAGGAAGTTTTTTGACAATAATAAAT
TAAATGAATTAGCTGAGTCTGTAAAGGAACATGGTATAATTCAACCTTTAATATTAAAGAAAGAAGAAAAGGGATATTCA
ATAATTGCAGGGGAAAGAAGATATAGAGCTGCTAAAATAGCAGAATTAACAGAGGTTCCTGCTTTAATAATGGATATTTC
AGATGAAAAACTTCTACAAGTATCTTTAATAGAAAATATTCAAAGAGAAGATTTAAATCCTATAGAAGAAGGATTAGCAT
ATGAAAGACTATTAAAAGAATTTGCTTTAACTCAAGAAGAGCTTTCAAAAACAATGGGAAAATCAAGAACTACAATAACA
AATACAATGAGATTATTAAAGTTAGATGATAGAGTTAAAGAGTATGTAATGGAAGGAGTTATTTCAGAAGGACATGGAAG
AGCTATTCTACCTTTAGAAAATGAGGCACAATATGAAATAGCTCAAAAAATAATTGATAACTCTCTTTCAGTTAGAGAAA
CTGAAAAATTAGTTAAAAAGATATTAAATGATGCTGTTGAAGAAAAAACATCAGAAAGAAGAAAACCACTTAATCCATAT
TACAAAGATGTTAGAGATAGACTTCAGGATCACTTTGGAACTAAAGTTAATTTAAATGCTAATAAGAATAAAGGTAAGAT
AGAAATAGAATACTATTCAGAAGAAGACTTACAGAGAATACTAGACATTATAAATATTTAA

Upstream 100 bases:

>100_bases
TGGATTGCCAATATGTTTATATGATGAAAGATGTAGGGGAGCTAAATCTTATGAAAAACTAACTGAGGAATTCCTAAAAA
GACAGGGAGTGAATATATAG

Downstream 100 bases:

>100_bases
AATGTTTCACGTGAAACATTTTAAAAACACGAAGGGATGATAAACTACATGGAGAATGTACTAAATATACTTACACAATA
TTCAACTTATATAACAATAG

Product: stage 0 sporulation protein J

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MAKKFGLGKGLGALIPEDNIKEEKKEKGGIINIELKDIKANKKQPRKFFDNNKLNELAESVKEHGIIQPLILKKEEKGYS
IIAGERRYRAAKIAELTEVPALIMDISDEKLLQVSLIENIQREDLNPIEEGLAYERLLKEFALTQEELSKTMGKSRTTIT
NTMRLLKLDDRVKEYVMEGVISEGHGRAILPLENEAQYEIAQKIIDNSLSVRETEKLVKKILNDAVEEKTSERRKPLNPY
YKDVRDRLQDHFGTKVNLNANKNKGKIEIEYYSEEDLQRILDIINI

Sequences:

>Translated_286_residues
MAKKFGLGKGLGALIPEDNIKEEKKEKGGIINIELKDIKANKKQPRKFFDNNKLNELAESVKEHGIIQPLILKKEEKGYS
IIAGERRYRAAKIAELTEVPALIMDISDEKLLQVSLIENIQREDLNPIEEGLAYERLLKEFALTQEELSKTMGKSRTTIT
NTMRLLKLDDRVKEYVMEGVISEGHGRAILPLENEAQYEIAQKIIDNSLSVRETEKLVKKILNDAVEEKTSERRKPLNPY
YKDVRDRLQDHFGTKVNLNANKNKGKIEIEYYSEEDLQRILDIINI
>Mature_285_residues
AKKFGLGKGLGALIPEDNIKEEKKEKGGIINIELKDIKANKKQPRKFFDNNKLNELAESVKEHGIIQPLILKKEEKGYSI
IAGERRYRAAKIAELTEVPALIMDISDEKLLQVSLIENIQREDLNPIEEGLAYERLLKEFALTQEELSKTMGKSRTTITN
TMRLLKLDDRVKEYVMEGVISEGHGRAILPLENEAQYEIAQKIIDNSLSVRETEKLVKKILNDAVEEKTSERRKPLNPYY
KDVRDRLQDHFGTKVNLNANKNKGKIEIEYYSEEDLQRILDIINI

Specific function: Required for the initiation of sporulation and for normal chromosome segregation. Antagonizes sporulation inhibition of soj. It probably interacts with a specific DNA site and other proteins involved in partitioning and cell division, and antagonizes soj

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the parB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004437
- InterPro:   IPR003115
- InterPro:   IPR013741 [H]

Pfam domain/function: PF08535 KorB; PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 32888; Mature: 32757

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKFGLGKGLGALIPEDNIKEEKKEKGGIINIELKDIKANKKQPRKFFDNNKLNELAES
CCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEEEECCCCCCCCCHHHHCCCHHHHHHHH
VKEHGIIQPLILKKEEKGYSIIAGERRYRAAKIAELTEVPALIMDISDEKLLQVSLIENI
HHHCCCCCHHHEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
QREDLNPIEEGLAYERLLKEFALTQEELSKTMGKSRTTITNTMRLLKLDDRVKEYVMEGV
HHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ISEGHGRAILPLENEAQYEIAQKIIDNSLSVRETEKLVKKILNDAVEEKTSERRKPLNPY
HCCCCCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
YKDVRDRLQDHFGTKVNLNANKNKGKIEIEYYSEEDLQRILDIINI
HHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCHHHHHHHHHHHCC
>Mature Secondary Structure 
AKKFGLGKGLGALIPEDNIKEEKKEKGGIINIELKDIKANKKQPRKFFDNNKLNELAES
CCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEEEECCCCCCCCCHHHHCCCHHHHHHHH
VKEHGIIQPLILKKEEKGYSIIAGERRYRAAKIAELTEVPALIMDISDEKLLQVSLIENI
HHHCCCCCHHHEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
QREDLNPIEEGLAYERLLKEFALTQEELSKTMGKSRTTITNTMRLLKLDDRVKEYVMEGV
HHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ISEGHGRAILPLENEAQYEIAQKIIDNSLSVRETEKLVKKILNDAVEEKTSERRKPLNPY
HCCCCCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
YKDVRDRLQDHFGTKVNLNANKNKGKIEIEYYSEEDLQRILDIINI
HHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 1552862; 9384377; 1900505; 8071208 [H]