| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18311600
Identifier: 18311600
GI number: 18311600
Start: 2995072
End: 2995614
Strand: Reverse
Name: 18311600
Synonym: CPE2618
Alternate gene names: NA
Gene position: 2995614-2995072 (Counterclockwise)
Preceding gene: 18311601
Following gene: 18311599
Centisome position: 98.82
GC content: 37.2
Gene sequence:
>543_bases ATGAAAAAATTTGTTTGTACAGTATGTGGATATGTTTATGAAGGAGAAAAAGCACCAGAAAAATGCCCAGTATGTGGAGT TGGAGCTGACAAATTCGTAGAACAAGGAGAAGACTTAGCATTTGCAGATGAGCACAGAATCGGAGTTGCTAAAGGCGTAG ATGAAAGAATAATCGAAGGATTACAAGCTAACTTTGTTGGAGAATGTACAGAAGTAGGAATGTACTTAGCTATGTCAAGA CAAGCTGATAGAGAAGGATTCCCAGAAGTTGCTGAAGCTTATAAAAGAATAGCTTTCGAAGAAGCAGAACACGCTGCTAA ATTCGCAGAAATGTTAGGAGAAGTTGTAGAAGCTGATACAAAAGCTAACTTACAAGCAAGAGTAAATGCAGAGCATGGAG CTTGCCAAGGTAAAAAAGATTTAGCTACTTTAGCTAAACAATTAAACTTAGATGCAATCCACGACACAGTTCACGAAATG TGTAAAGATGAAGCTAGACACGGAAAAGCTTTCGCTGGATTATTAAACAGATACTTTAAATAA
Upstream 100 bases:
>100_bases GAGGAAATACATCAACAAAGAAACACTTAAATAAAGACTTTTAAATTATGATATAAATTGAAATTAGATAAATTGTTTGT TTTGTAGGAGGAATAAAATT
Downstream 100 bases:
>100_bases GAATCCATCACAAATTGTTTGTATTGATATATTTATAAAGAAAACACCACTAAAACACCTAGTTTAGTGGTGTTTTTTTA GTTTGAAAGGTATTTTTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 180; Mature: 180
Protein sequence:
>180_residues MKKFVCTVCGYVYEGEKAPEKCPVCGVGADKFVEQGEDLAFADEHRIGVAKGVDERIIEGLQANFVGECTEVGMYLAMSR QADREGFPEVAEAYKRIAFEEAEHAAKFAEMLGEVVEADTKANLQARVNAEHGACQGKKDLATLAKQLNLDAIHDTVHEM CKDEARHGKAFAGLLNRYFK
Sequences:
>Translated_180_residues MKKFVCTVCGYVYEGEKAPEKCPVCGVGADKFVEQGEDLAFADEHRIGVAKGVDERIIEGLQANFVGECTEVGMYLAMSR QADREGFPEVAEAYKRIAFEEAEHAAKFAEMLGEVVEADTKANLQARVNAEHGACQGKKDLATLAKQLNLDAIHDTVHEM CKDEARHGKAFAGLLNRYFK >Mature_180_residues MKKFVCTVCGYVYEGEKAPEKCPVCGVGADKFVEQGEDLAFADEHRIGVAKGVDERIIEGLQANFVGECTEVGMYLAMSR QADREGFPEVAEAYKRIAFEEAEHAAKFAEMLGEVVEADTKANLQARVNAEHGACQGKKDLATLAKQLNLDAIHDTVHEM CKDEARHGKAFAGLLNRYFK
Specific function: Unknown
COG id: COG1592
COG function: function code C; Rubrerythrin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ferritin-like diiron domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009040 - InterPro: IPR012347 - InterPro: IPR009078 - InterPro: IPR003251 [H]
Pfam domain/function: PF02915 Rubrerythrin [H]
EC number: NA
Molecular weight: Translated: 19805; Mature: 19805
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: PS50903 RUBREDOXIN_LIKE ; PS50905 FERRITIN_LIKE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 3.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKFVCTVCGYVYEGEKAPEKCPVCGVGADKFVEQGEDLAFADEHRIGVAKGVDERIIEG CCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHCHHHHCCHHHHHHHH LQANFVGECTEVGMYLAMSRQADREGFPEVAEAYKRIAFEEAEHAAKFAEMLGEVVEADT HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC KANLQARVNAEHGACQGKKDLATLAKQLNLDAIHDTVHEMCKDEARHGKAFAGLLNRYFK CCCHHEEECCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC >Mature Secondary Structure MKKFVCTVCGYVYEGEKAPEKCPVCGVGADKFVEQGEDLAFADEHRIGVAKGVDERIIEG CCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHCHHHHCCHHHHHHHH LQANFVGECTEVGMYLAMSRQADREGFPEVAEAYKRIAFEEAEHAAKFAEMLGEVVEADT HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC KANLQARVNAEHGACQGKKDLATLAKQLNLDAIHDTVHEMCKDEARHGKAFAGLLNRYFK CCCHHEEECCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]