| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18311556
Identifier: 18311556
GI number: 18311556
Start: 2949636
End: 2950292
Strand: Direct
Name: 18311556
Synonym: CPE2574
Alternate gene names: NA
Gene position: 2949636-2950292 (Clockwise)
Preceding gene: 18311551
Following gene: 18311564
Centisome position: 97.3
GC content: 33.64
Gene sequence:
>657_bases ATGGAAATAATTTATCCAAATGATTTTGTTAGATTTTTCAACGAAGATGAAGAAGTAGATGAAGTAGGTGAGTTTGAAGT CTTACCTGAGGATACAGAAAACTCCTTTGAAAGATACTACACTGGTAATGAAGATACATTTAATGATGACTATCCTATGA ATTATAGAAATTCTGACAATGATTCTAAATTCTCAGTAATACCACCAGTTATTAAAAATATTCCTGATAATATTGCAAAT GTACCTGCTGTTATACAAGACCTCCCTTATGCAATAAAGGATATGGGAAATGACTTAATGCATAGCGCACCTGTTGGATA TATGTCAAATATGCTTCCTATACCAACTAATTGGCAAAGTCCTCAATCACCTTCACCAATGGGACCACCTCCATCTTATA TACCATCAAAAAAAGATGCAGGTGTTCAAAATTTTGGTCAAGGAAGTGGAAATCCAAATGCAAAAAATGTTAGTTCTGGC TCTATAAGATTTTGTCTATATAGATTCACTTATATTTGGCAAACTAATGGAAGAAGCTATTGGGCTTACTTAACTAGAGT TGATAGAAGATCAGTTTCTGGATGGCGTTGGGCTGGCTTTAGATGGGTTTACTTTGGAGTTGATTTAAGAAGAATTGATT CCTTTATTTGTTACTAA
Upstream 100 bases:
>100_bases TTTTATGATTATTAAATTTTATTAAAGCCTTTATAAAATTCACCTTTAGATAACAAAAAGCATAGTTTAATACTAAATAA AAATTTTATAGGAGATACTT
Downstream 100 bases:
>100_bases ATAATAAAATATTATTTATTTCAAACTTTTATCCCTTAATCTACTAAAATCTATTTAATTTATTATTTTTCTAAACTAAA AGCCTTTACTAATTAACTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 218; Mature: 218
Protein sequence:
>218_residues MEIIYPNDFVRFFNEDEEVDEVGEFEVLPEDTENSFERYYTGNEDTFNDDYPMNYRNSDNDSKFSVIPPVIKNIPDNIAN VPAVIQDLPYAIKDMGNDLMHSAPVGYMSNMLPIPTNWQSPQSPSPMGPPPSYIPSKKDAGVQNFGQGSGNPNAKNVSSG SIRFCLYRFTYIWQTNGRSYWAYLTRVDRRSVSGWRWAGFRWVYFGVDLRRIDSFICY
Sequences:
>Translated_218_residues MEIIYPNDFVRFFNEDEEVDEVGEFEVLPEDTENSFERYYTGNEDTFNDDYPMNYRNSDNDSKFSVIPPVIKNIPDNIAN VPAVIQDLPYAIKDMGNDLMHSAPVGYMSNMLPIPTNWQSPQSPSPMGPPPSYIPSKKDAGVQNFGQGSGNPNAKNVSSG SIRFCLYRFTYIWQTNGRSYWAYLTRVDRRSVSGWRWAGFRWVYFGVDLRRIDSFICY >Mature_218_residues MEIIYPNDFVRFFNEDEEVDEVGEFEVLPEDTENSFERYYTGNEDTFNDDYPMNYRNSDNDSKFSVIPPVIKNIPDNIAN VPAVIQDLPYAIKDMGNDLMHSAPVGYMSNMLPIPTNWQSPQSPSPMGPPPSYIPSKKDAGVQNFGQGSGNPNAKNVSSG SIRFCLYRFTYIWQTNGRSYWAYLTRVDRRSVSGWRWAGFRWVYFGVDLRRIDSFICY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25146; Mature: 25146
Theoretical pI: Translated: 4.39; Mature: 4.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEIIYPNDFVRFFNEDEEVDEVGEFEVLPEDTENSFERYYTGNEDTFNDDYPMNYRNSDN CEEECCCHHHHHCCCCCCHHHCCCEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC DSKFSVIPPVIKNIPDNIANVPAVIQDLPYAIKDMGNDLMHSAPVGYMSNMLPIPTNWQS CCEEEECCHHHHHCCHHHHHHHHHHHHCCHHHHHCCHHHHHHCCHHHHHCCCCCCCCCCC PQSPSPMGPPPSYIPSKKDAGVQNFGQGSGNPNAKNVSSGSIRFCLYRFTYIWQTNGRSY CCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEE WAYLTRVDRRSVSGWRWAGFRWVYFGVDLRRIDSFICY EHHHHHHHHHCCCCEEECCEEEEEECCCHHHHHHHHCC >Mature Secondary Structure MEIIYPNDFVRFFNEDEEVDEVGEFEVLPEDTENSFERYYTGNEDTFNDDYPMNYRNSDN CEEECCCHHHHHCCCCCCHHHCCCEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC DSKFSVIPPVIKNIPDNIANVPAVIQDLPYAIKDMGNDLMHSAPVGYMSNMLPIPTNWQS CCEEEECCHHHHHCCHHHHHHHHHHHHCCHHHHHCCHHHHHHCCHHHHHCCCCCCCCCCC PQSPSPMGPPPSYIPSKKDAGVQNFGQGSGNPNAKNVSSGSIRFCLYRFTYIWQTNGRSY CCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEE WAYLTRVDRRSVSGWRWAGFRWVYFGVDLRRIDSFICY EHHHHHHHHHCCCCEEECCEEEEEECCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA