| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
Click here to switch to the map view.
The map label for this gene is 18311553
Identifier: 18311553
GI number: 18311553
Start: 2943457
End: 2944098
Strand: Reverse
Name: 18311553
Synonym: CPE2571
Alternate gene names: NA
Gene position: 2944098-2943457 (Counterclockwise)
Preceding gene: 18311554
Following gene: 18311552
Centisome position: 97.12
GC content: 26.32
Gene sequence:
>642_bases ATGGAAACAGCTAAGAGGGTATTAAAGAATTTTTTTATAAAAAGTATTTTACTTATAATTTCAGTAATTTTAGCAATGGC ATTTTATAAGTTAATAGTAAAGGAATGCATAGATGTTTTTATAAAAATAGATTTGAGTGGTAAAAAAGGTTTTGTAATAT ATAACTTTTTTAAGTTGACAAGTGTAATGCTTATATATCAAGTTTTCTTAACAACAACTAGAATGAAAACTTCAAAACTA TTTAAATTATTCTTATTTGGCTTATATGTAGGAACAATGTTTATACTATTATTTGCTAGACCTAAAATGGCCAGAGGATT TCAGTTAGATCCCTTTGCAGTTTTACATGGTCTACGAGGGGATAGAACAGGGCAGTTATATTTAATAGGTAATATAATAT TCTTTATGCCTATAGGATATGTGCTAAGAAAATATAACTTTGTATTAGCCTTTATATTATCTGCCTCTATAGAGTTTAAT ATAGAACTTGCTCAATATGTATTTAAAAGAGGATTCTTTGATTTAGGGGATGTATTTATAAATTTAGTTGGTATATTTAT TGCGTACTTTATTTGTAAGATAGCTTACTTTATTAAAGATAGACTTTATAAAAGAGATCATGAGATAGAAGAGGTTGCAT AG
Upstream 100 bases:
>100_bases ATAATAATATAAGAGGCTTGTTTTAAAAAGCACTTAGTTATTATACTATAAAAATATTAATATTCAATATAAAATTTATA AATTATTGGGGGTGGTTTTT
Downstream 100 bases:
>100_bases ATAAGAATTACTATAAGTAAAAAAATAGAGAAATATACATATAAATAAAGAATTTTATAGAAAAAAGGATGTAATATGAA TGATTACATCCCTTTTTTTC
Product: hypothetical protein
Products: NA
Alternate protein names: Transporter Membrane Protein
Number of amino acids: Translated: 213; Mature: 213
Protein sequence:
>213_residues METAKRVLKNFFIKSILLIISVILAMAFYKLIVKECIDVFIKIDLSGKKGFVIYNFFKLTSVMLIYQVFLTTTRMKTSKL FKLFLFGLYVGTMFILLFARPKMARGFQLDPFAVLHGLRGDRTGQLYLIGNIIFFMPIGYVLRKYNFVLAFILSASIEFN IELAQYVFKRGFFDLGDVFINLVGIFIAYFICKIAYFIKDRLYKRDHEIEEVA
Sequences:
>Translated_213_residues METAKRVLKNFFIKSILLIISVILAMAFYKLIVKECIDVFIKIDLSGKKGFVIYNFFKLTSVMLIYQVFLTTTRMKTSKL FKLFLFGLYVGTMFILLFARPKMARGFQLDPFAVLHGLRGDRTGQLYLIGNIIFFMPIGYVLRKYNFVLAFILSASIEFN IELAQYVFKRGFFDLGDVFINLVGIFIAYFICKIAYFIKDRLYKRDHEIEEVA >Mature_213_residues METAKRVLKNFFIKSILLIISVILAMAFYKLIVKECIDVFIKIDLSGKKGFVIYNFFKLTSVMLIYQVFLTTTRMKTSKL FKLFLFGLYVGTMFILLFARPKMARGFQLDPFAVLHGLRGDRTGQLYLIGNIIFFMPIGYVLRKYNFVLAFILSASIEFN IELAQYVFKRGFFDLGDVFINLVGIFIAYFICKIAYFIKDRLYKRDHEIEEVA
Specific function: Unknown
COG id: COG4767
COG function: function code V; Glycopeptide antibiotics resistance protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24866; Mature: 24866
Theoretical pI: Translated: 10.22; Mature: 10.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METAKRVLKNFFIKSILLIISVILAMAFYKLIVKECIDVFIKIDLSGKKGFVIYNFFKLT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEHHHHHHH SVMLIYQVFLTTTRMKTSKLFKLFLFGLYVGTMFILLFARPKMARGFQLDPFAVLHGLRG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHCCCC DRTGQLYLIGNIIFFMPIGYVLRKYNFVLAFILSASIEFNIELAQYVFKRGFFDLGDVFI CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHH NLVGIFIAYFICKIAYFIKDRLYKRDHEIEEVA HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC >Mature Secondary Structure METAKRVLKNFFIKSILLIISVILAMAFYKLIVKECIDVFIKIDLSGKKGFVIYNFFKLT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEHHHHHHH SVMLIYQVFLTTTRMKTSKLFKLFLFGLYVGTMFILLFARPKMARGFQLDPFAVLHGLRG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHCCCC DRTGQLYLIGNIIFFMPIGYVLRKYNFVLAFILSASIEFNIELAQYVFKRGFFDLGDVFI CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHH NLVGIFIAYFICKIAYFIKDRLYKRDHEIEEVA HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA