| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is yclK [H]
Identifier: 18311469
GI number: 18311469
Start: 2847777
End: 2849186
Strand: Reverse
Name: yclK [H]
Synonym: CPE2487
Alternate gene names: 18311469
Gene position: 2849186-2847777 (Counterclockwise)
Preceding gene: 18311470
Following gene: 18311468
Centisome position: 93.99
GC content: 26.88
Gene sequence:
>1410_bases ATGAGATGTCGTGGCTTAGTTCCAAAGTTAATCTTAACACTAAGCGTAACAATATGCATTACTTTCTTTATTGTAGGTAT AATACTTTCTAGCTTGTTTAGAGAAGAATATTATCAAGAAAGATTAAAAACTTTATCTGGAGAAGCGGAAGTTATAGAAC AAGTTGTAAATTCATTTATGAATAGTGAAACTACTTTAGGTGAATTAGATAAATCTATATCATTTATAGGAGATTCATTA AAAGCAGATATTTATTTAATTGATAGTTATGGTTACATATATTCAGTTTCTAATGAAAAATATGATTATTTAAAACGCAC AAAAATAGATGATAATGATATGAAAACATTAAAGGAAAATATTCCTATAGAGCAGAAGAAAAAAAATGAATTTATATATT CTAAACCTATCTTCTACAAGGGGGTATTTACAGGAGCTGTTTCAATAGTTACTCCTTTAAGTGCTTTATCAGATTCTCTT GTTAGAATTAATCAAATTGTATGGATGTGTGTAGCTATAGCTATAATTTTTTCTGGATTAGCAATATATTTTATTTCAAA AAAGATAATCATAAAACCTTTAAAAGTTATAAATAATGCTGCTAAAAAGATTGCTAACGGAGAAATTGGAAATAGAGTTA ATGTTTCTTATGATGATGAGGTCGGTGAGTTAGCTGAATCATTTAATATAATGGCAACTTCTATTGAGGAGGCAGAACTA AATAGAAGGGAATTTATATCTAATGTATCTCATGAGTTAAGATCACCAATGACATCGATTAAGGGCTTCATAACTGCCAT ATTAGATGGAGTTATTCCTAAAGATAAAGAAGAATATTATCTTGTTATAGTAAATGATGAGATAAGTAGATTAACTAGAC TTATAAATGACTTACTAGATTTATCTGCTATGCAAGCTGGAAAACTAGAGTTTAATATAAGTGAGTTAGAATTAAATAGA ATTATAGAGACAACTGTATTAAAGATGAATCAAAAGGCTGCAAGTAAAAATATAAAAATTGAAGTTCTCTTAGAGAGCGA AAAATTATATGTTTATGGAGATAATGATAGATTAATACAGGTTGTTACTAATTTAGTTGATAATGCTATAAAATACTGTG ATGAAAATGGTGAAGTTAAAATATCAACTAAAACAAAGGGAAGTAAGATTATTGTTAGCATATTTAACACTAGTAAAGGA ATAGATGAATATGATTTAACTCATATTTGGGATATATTTTATAAAGTTGACAAGGCAAGAAGTAATAAAACTAGTACAGG GTTAGGATTATCTATTGTGAGAAATATAATACTGCAACTAGAAGAAGATATTTGGGCTGAAAATGTCAAAGATAAAAATG GTGAAATAAAAGGTGTTAGATTTAATTTTACTTTAACTAAAGTTAAATAA
Upstream 100 bases:
>100_bases TTGATGTTCACATAAAGAGATTAAGAGAAAAATTAAACGGTGGAGAAGACTGGCAACTTGAAACTGTTTGGGGTGTTGGG TATAAATTTGAGGTGAAATA
Downstream 100 bases:
>100_bases GTATTGCATAGGGGGTCTTTATGGGGAATTTTTTTAAGAACTCTAAAAAGGGGAAGGATCTCCATGGAGTAAATGAAAAA AACTATGACAATATAGTGAT
Product: two-component sensor histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 469; Mature: 469
Protein sequence:
>469_residues MRCRGLVPKLILTLSVTICITFFIVGIILSSLFREEYYQERLKTLSGEAEVIEQVVNSFMNSETTLGELDKSISFIGDSL KADIYLIDSYGYIYSVSNEKYDYLKRTKIDDNDMKTLKENIPIEQKKKNEFIYSKPIFYKGVFTGAVSIVTPLSALSDSL VRINQIVWMCVAIAIIFSGLAIYFISKKIIIKPLKVINNAAKKIANGEIGNRVNVSYDDEVGELAESFNIMATSIEEAEL NRREFISNVSHELRSPMTSIKGFITAILDGVIPKDKEEYYLVIVNDEISRLTRLINDLLDLSAMQAGKLEFNISELELNR IIETTVLKMNQKAASKNIKIEVLLESEKLYVYGDNDRLIQVVTNLVDNAIKYCDENGEVKISTKTKGSKIIVSIFNTSKG IDEYDLTHIWDIFYKVDKARSNKTSTGLGLSIVRNIILQLEEDIWAENVKDKNGEIKGVRFNFTLTKVK
Sequences:
>Translated_469_residues MRCRGLVPKLILTLSVTICITFFIVGIILSSLFREEYYQERLKTLSGEAEVIEQVVNSFMNSETTLGELDKSISFIGDSL KADIYLIDSYGYIYSVSNEKYDYLKRTKIDDNDMKTLKENIPIEQKKKNEFIYSKPIFYKGVFTGAVSIVTPLSALSDSL VRINQIVWMCVAIAIIFSGLAIYFISKKIIIKPLKVINNAAKKIANGEIGNRVNVSYDDEVGELAESFNIMATSIEEAEL NRREFISNVSHELRSPMTSIKGFITAILDGVIPKDKEEYYLVIVNDEISRLTRLINDLLDLSAMQAGKLEFNISELELNR IIETTVLKMNQKAASKNIKIEVLLESEKLYVYGDNDRLIQVVTNLVDNAIKYCDENGEVKISTKTKGSKIIVSIFNTSKG IDEYDLTHIWDIFYKVDKARSNKTSTGLGLSIVRNIILQLEEDIWAENVKDKNGEIKGVRFNFTLTKVK >Mature_469_residues MRCRGLVPKLILTLSVTICITFFIVGIILSSLFREEYYQERLKTLSGEAEVIEQVVNSFMNSETTLGELDKSISFIGDSL KADIYLIDSYGYIYSVSNEKYDYLKRTKIDDNDMKTLKENIPIEQKKKNEFIYSKPIFYKGVFTGAVSIVTPLSALSDSL VRINQIVWMCVAIAIIFSGLAIYFISKKIIIKPLKVINNAAKKIANGEIGNRVNVSYDDEVGELAESFNIMATSIEEAEL NRREFISNVSHELRSPMTSIKGFITAILDGVIPKDKEEYYLVIVNDEISRLTRLINDLLDLSAMQAGKLEFNISELELNR IIETTVLKMNQKAASKNIKIEVLLESEKLYVYGDNDRLIQVVTNLVDNAIKYCDENGEVKISTKTKGSKIIVSIFNTSKG IDEYDLTHIWDIFYKVDKARSNKTSTGLGLSIVRNIILQLEEDIWAENVKDKNGEIKGVRFNFTLTKVK
Specific function: Could be member of the two-component regulatory system yclK/yclJ. Potentially phosphorylates yclJ [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1788393, Length=310, Percent_Identity=30, Blast_Score=155, Evalue=5e-39, Organism=Escherichia coli, GI1787894, Length=362, Percent_Identity=22.9281767955801, Blast_Score=102, Evalue=5e-23, Organism=Escherichia coli, GI87082128, Length=288, Percent_Identity=25, Blast_Score=101, Evalue=9e-23, Organism=Escherichia coli, GI1786600, Length=239, Percent_Identity=27.6150627615063, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1789149, Length=326, Percent_Identity=26.0736196319018, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI145693157, Length=224, Percent_Identity=27.2321428571429, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1790346, Length=283, Percent_Identity=27.9151943462898, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI87081816, Length=200, Percent_Identity=29.5, Blast_Score=90, Evalue=3e-19, Organism=Escherichia coli, GI1790436, Length=209, Percent_Identity=27.2727272727273, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI48994928, Length=239, Percent_Identity=26.3598326359833, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI1790861, Length=344, Percent_Identity=21.8023255813953, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1789808, Length=268, Percent_Identity=25.3731343283582, Blast_Score=79, Evalue=9e-16, Organism=Escherichia coli, GI1788713, Length=236, Percent_Identity=23.728813559322, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1786783, Length=305, Percent_Identity=22.6229508196721, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1786912, Length=236, Percent_Identity=25.8474576271186, Blast_Score=75, Evalue=9e-15, Organism=Escherichia coli, GI1789403, Length=218, Percent_Identity=28.4403669724771, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1788549, Length=202, Percent_Identity=26.7326732673267, Blast_Score=73, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 53151; Mature: 53151
Theoretical pI: Translated: 5.48; Mature: 5.48
Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRCRGLVPKLILTLSVTICITFFIVGIILSSLFREEYYQERLKTLSGEAEVIEQVVNSFM CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH NSETTLGELDKSISFIGDSLKADIYLIDSYGYIYSVSNEKYDYLKRTKIDDNDMKTLKEN CCCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEECCCCHHHHHHCCCCCHHHHHHHHC IPIEQKKKNEFIYSKPIFYKGVFTGAVSIVTPLSALSDSLVRINQIVWMCVAIAIIFSGL CCCCCCCCCCEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AIYFISKKIIIKPLKVINNAAKKIANGEIGNRVNVSYDDEVGELAESFNIMATSIEEAEL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHCCHHHHHH NRREFISNVSHELRSPMTSIKGFITAILDGVIPKDKEEYYLVIVNDEISRLTRLINDLLD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHH LSAMQAGKLEFNISELELNRIIETTVLKMNQKAASKNIKIEVLLESEKLYVYGDNDRLIQ HHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCHHHH VVTNLVDNAIKYCDENGEVKISTKTKGSKIIVSIFNTSKGIDEYDLTHIWDIFYKVDKAR HHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC SNKTSTGLGLSIVRNIILQLEEDIWAENVKDKNGEIKGVRFNFTLTKVK CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC >Mature Secondary Structure MRCRGLVPKLILTLSVTICITFFIVGIILSSLFREEYYQERLKTLSGEAEVIEQVVNSFM CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH NSETTLGELDKSISFIGDSLKADIYLIDSYGYIYSVSNEKYDYLKRTKIDDNDMKTLKEN CCCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEECCCCHHHHHHCCCCCHHHHHHHHC IPIEQKKKNEFIYSKPIFYKGVFTGAVSIVTPLSALSDSLVRINQIVWMCVAIAIIFSGL CCCCCCCCCCEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AIYFISKKIIIKPLKVINNAAKKIANGEIGNRVNVSYDDEVGELAESFNIMATSIEEAEL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHCCHHHHHH NRREFISNVSHELRSPMTSIKGFITAILDGVIPKDKEEYYLVIVNDEISRLTRLINDLLD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHH LSAMQAGKLEFNISELELNRIIETTVLKMNQKAASKNIKIEVLLESEKLYVYGDNDRLIQ HHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCHHHH VVTNLVDNAIKYCDENGEVKISTKTKGSKIIVSIFNTSKGIDEYDLTHIWDIFYKVDKAR HHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC SNKTSTGLGLSIVRNIILQLEEDIWAENVKDKNGEIKGVRFNFTLTKVK CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969502; 9384377 [H]