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The map label for this gene is yqiR [H]

Identifier: 18311340

GI number: 18311340

Start: 2717915

End: 2719921

Strand: Direct

Name: yqiR [H]

Synonym: CPE2358

Alternate gene names: 18311340

Gene position: 2717915-2719921 (Clockwise)

Preceding gene: 18311335

Following gene: 18311347

Centisome position: 89.66

GC content: 28.6

Gene sequence:

>2007_bases
ATGTATTCAAGAGAATTGATTATAAAGACGCCCTTAGGATTACACACTAGATACTCTGCTATGATTGTTAATAAGGCTTC
TGAAATAGAGTCTAAGTATAAAGTTAAACTCTATATAAAAAAAGAATCCTATACAGATTGGCTTGGAATAAGTATGCTTG
CAATACTTTCTCTTAAGGTGTTGCCTAATGAAAGTATATTAATTGGATCTAAAAATGAAGGAATGATTGAAAAGTTAGCT
GTTCAATCTCTTCTTGAGTTTATTGATAAAAACATAAATAATCCCATTGAATCTGAAGATAGTGAAATAGATGAAATAAT
AGATGCTAGCATAGTAGCTAATGAACAGGTTCTTGAAAGTTTGCCAATAGGTATTGTTGTTATAGATATAGATCAAAATA
TAATAACAATTAATCAATATGCTTTAAGATTTATTGGATGCAATAAAAAAGATGTTAAAGGAAAAAAGATTAATGAAGTT
ATTCCATCATCTCAGCTTCCTCATGTTATGCTTAGTAATTTAAAAAAGTATGGATCAACTCTTCATATAAATAACAGAGT
TGGCTTAGTAAATAGCTCTCCTCTTTTCATAAACGATAAGATTATAGGGGCTGTAAGTGTTATTCAAGATGTATCTGATA
TTATAGGTATGAAAGAAATAAATGAGAAATTTACTAAGATACTTGAAAACTCACAGGATATGATTTGCTTTGTAGATGAA
AATGGCATAATAAATTATTTAAATCCTGCATATATTAAAAACTTTTCTAAAGTTAGTTCTGATGTTATAGGAAAAAGTAT
TTTTGATATTGCTCCTAATGGACTTAGAGCTAAAGTATTTAAAGAAAAAACTTTATTAAAAGATGTAATTCATAAGAAAA
ACGGTATAAATGTTATAAGTACTATTGATCCTTTATTTATTGATGGACAGTTTAAAGGAGTTATTTCTACTTCTAGACCA
GTTAGTTTAATTAAAGAACTTATGTCAAAACTAAATAAATCTGAACAAGAATTAGATTATTATAAAAATGAGTTTTTAAG
ACAGTTATCTAAAAATTCTTCTTTTAATAATATTATAGGTTCAACTAGAACTCTAAAGGATATAATGTACATGTGTCAAA
AGGCTTCAGAAACCACATCAACTGTTCTTATTCGTGGTGAAAGTGGTACAGGTAAGGAACTTATTGCAAAGGCTATACAC
AATAATAGTAATAGAAAAAATAAGCCTTTTGTAAGGGTTAACTGTGCTTCAATTCCTGAAAATCTCTTAGAAAGTGAATT
GTTCGGATATGAAAAGGGAGCTTTTACTGGGGCAGTTCAAAGCAAACCTGGTAAATTTGCTATTGCTGATACAGGTACTA
TATTCTTAGATGAAATAGGTGATATGCCCTTATCAATGCAAGTTAAACTCCTTAGAGTTTTACAAGAAAGAGAGATTGAA
AGCGTAGGAGGAATAACTCCTAAAAACATTGATGTAAGAGTTATTGCTGCAACTAATAGAAATTTAGAAGAAATGATTGA
AGAGGGTTCCTTTAGAGAGGATCTTTATTACAGACTTAATGTCTTAGGTATTAATCTTCCTCCACTTAGAGAACGTAAAG
AAGATATTCCTGAACTCGCCGAACATTTTATAACTAAGCTAAATAAAAAGTTACATAAAACTATATTAGGAATAAAACAA
GATGCCCTTAATCTACTAATTGAGTATTCTTGGCCTGGAAATATACGTGAGCTTGAAAATATAATGGAAAGGGCCATAAA
TCTTTGTGATGGAGATTATATAGATAGTTCTTATCTACCTTCATATTTAAAGCCAGTTGAATCAAAGTCTTTTAATTTAA
ATATTGATATTGATCATATACTTCCCTTTGAAGAATATGAAAAACAAATAATAGAAGCAGCTATGAAAAAGTACAAATCC
TTTAATAAGGCAGGAAAAGCTTTAGGATTAACTCATAGAACAATTTCTTTGAAATGTAAAAAGTATAATATAGATGTAAA
AAAATAA

Upstream 100 bases:

>100_bases
TTCTGATAATATATTATTAATACTTGATAAAAAATATCAACCTTATTCACTTTTTATATAAATTCATAAAAAAATAAAAC
TTTGGACGGTGATTTACTCC

Downstream 100 bases:

>100_bases
TAAAATAAAAAAACACTTGGAGACCAGCACATCTCCAAGTGTTTTTTTATTAGTAAGAGTTTAGTAACATTCTGAAGTAT
AATTATGACAAGACTTTTTA

Product: sigma-L-dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 668; Mature: 668

Protein sequence:

>668_residues
MYSRELIIKTPLGLHTRYSAMIVNKASEIESKYKVKLYIKKESYTDWLGISMLAILSLKVLPNESILIGSKNEGMIEKLA
VQSLLEFIDKNINNPIESEDSEIDEIIDASIVANEQVLESLPIGIVVIDIDQNIITINQYALRFIGCNKKDVKGKKINEV
IPSSQLPHVMLSNLKKYGSTLHINNRVGLVNSSPLFINDKIIGAVSVIQDVSDIIGMKEINEKFTKILENSQDMICFVDE
NGIINYLNPAYIKNFSKVSSDVIGKSIFDIAPNGLRAKVFKEKTLLKDVIHKKNGINVISTIDPLFIDGQFKGVISTSRP
VSLIKELMSKLNKSEQELDYYKNEFLRQLSKNSSFNNIIGSTRTLKDIMYMCQKASETTSTVLIRGESGTGKELIAKAIH
NNSNRKNKPFVRVNCASIPENLLESELFGYEKGAFTGAVQSKPGKFAIADTGTIFLDEIGDMPLSMQVKLLRVLQEREIE
SVGGITPKNIDVRVIAATNRNLEEMIEEGSFREDLYYRLNVLGINLPPLRERKEDIPELAEHFITKLNKKLHKTILGIKQ
DALNLLIEYSWPGNIRELENIMERAINLCDGDYIDSSYLPSYLKPVESKSFNLNIDIDHILPFEEYEKQIIEAAMKKYKS
FNKAGKALGLTHRTISLKCKKYNIDVKK

Sequences:

>Translated_668_residues
MYSRELIIKTPLGLHTRYSAMIVNKASEIESKYKVKLYIKKESYTDWLGISMLAILSLKVLPNESILIGSKNEGMIEKLA
VQSLLEFIDKNINNPIESEDSEIDEIIDASIVANEQVLESLPIGIVVIDIDQNIITINQYALRFIGCNKKDVKGKKINEV
IPSSQLPHVMLSNLKKYGSTLHINNRVGLVNSSPLFINDKIIGAVSVIQDVSDIIGMKEINEKFTKILENSQDMICFVDE
NGIINYLNPAYIKNFSKVSSDVIGKSIFDIAPNGLRAKVFKEKTLLKDVIHKKNGINVISTIDPLFIDGQFKGVISTSRP
VSLIKELMSKLNKSEQELDYYKNEFLRQLSKNSSFNNIIGSTRTLKDIMYMCQKASETTSTVLIRGESGTGKELIAKAIH
NNSNRKNKPFVRVNCASIPENLLESELFGYEKGAFTGAVQSKPGKFAIADTGTIFLDEIGDMPLSMQVKLLRVLQEREIE
SVGGITPKNIDVRVIAATNRNLEEMIEEGSFREDLYYRLNVLGINLPPLRERKEDIPELAEHFITKLNKKLHKTILGIKQ
DALNLLIEYSWPGNIRELENIMERAINLCDGDYIDSSYLPSYLKPVESKSFNLNIDIDHILPFEEYEKQIIEAAMKKYKS
FNKAGKALGLTHRTISLKCKKYNIDVKK
>Mature_668_residues
MYSRELIIKTPLGLHTRYSAMIVNKASEIESKYKVKLYIKKESYTDWLGISMLAILSLKVLPNESILIGSKNEGMIEKLA
VQSLLEFIDKNINNPIESEDSEIDEIIDASIVANEQVLESLPIGIVVIDIDQNIITINQYALRFIGCNKKDVKGKKINEV
IPSSQLPHVMLSNLKKYGSTLHINNRVGLVNSSPLFINDKIIGAVSVIQDVSDIIGMKEINEKFTKILENSQDMICFVDE
NGIINYLNPAYIKNFSKVSSDVIGKSIFDIAPNGLRAKVFKEKTLLKDVIHKKNGINVISTIDPLFIDGQFKGVISTSRP
VSLIKELMSKLNKSEQELDYYKNEFLRQLSKNSSFNNIIGSTRTLKDIMYMCQKASETTSTVLIRGESGTGKELIAKAIH
NNSNRKNKPFVRVNCASIPENLLESELFGYEKGAFTGAVQSKPGKFAIADTGTIFLDEIGDMPLSMQVKLLRVLQEREIE
SVGGITPKNIDVRVIAATNRNLEEMIEEGSFREDLYYRLNVLGINLPPLRERKEDIPELAEHFITKLNKKLHKTILGIKQ
DALNLLIEYSWPGNIRELENIMERAINLCDGDYIDSSYLPSYLKPVESKSFNLNIDIDHILPFEEYEKQIIEAAMKKYKS
FNKAGKALGLTHRTISLKCKKYNIDVKK

Specific function: Required For Induction Of Expression Of The Hydrogenase- 4 Structural Genes. [C]

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI87082117, Length=352, Percent_Identity=44.0340909090909, Blast_Score=293, Evalue=2e-80,
Organism=Escherichia coli, GI1789233, Length=460, Percent_Identity=36.0869565217391, Blast_Score=293, Evalue=3e-80,
Organism=Escherichia coli, GI1788550, Length=328, Percent_Identity=46.9512195121951, Blast_Score=290, Evalue=2e-79,
Organism=Escherichia coli, GI1790437, Length=311, Percent_Identity=46.6237942122186, Blast_Score=286, Evalue=3e-78,
Organism=Escherichia coli, GI1789087, Length=319, Percent_Identity=45.4545454545455, Blast_Score=271, Evalue=7e-74,
Organism=Escherichia coli, GI1790299, Length=264, Percent_Identity=46.2121212121212, Blast_Score=257, Evalue=2e-69,
Organism=Escherichia coli, GI1788905, Length=229, Percent_Identity=48.471615720524, Blast_Score=242, Evalue=5e-65,
Organism=Escherichia coli, GI1786524, Length=243, Percent_Identity=47.3251028806584, Blast_Score=231, Evalue=2e-61,
Organism=Escherichia coli, GI87082152, Length=210, Percent_Identity=52.8571428571429, Blast_Score=223, Evalue=2e-59,
Organism=Escherichia coli, GI87081872, Length=320, Percent_Identity=38.75, Blast_Score=221, Evalue=2e-58,
Organism=Escherichia coli, GI1787583, Length=319, Percent_Identity=38.2445141065831, Blast_Score=220, Evalue=2e-58,
Organism=Escherichia coli, GI87081858, Length=454, Percent_Identity=27.5330396475771, Blast_Score=153, Evalue=3e-38,
Organism=Escherichia coli, GI1789828, Length=344, Percent_Identity=28.7790697674419, Blast_Score=132, Evalue=6e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR002197
- InterPro:   IPR016040
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 75383; Mature: 75383

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: PS50112 PAS ; PS00675 SIGMA54_INTERACT_1 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSRELIIKTPLGLHTRYSAMIVNKASEIESKYKVKLYIKKESYTDWLGISMLAILSLKV
CCCCCEEEECCCCCCCCHHHHEECCHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHHHC
LPNESILIGSKNEGMIEKLAVQSLLEFIDKNINNPIESEDSEIDEIIDASIVANEQVLES
CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHH
LPIGIVVIDIDQNIITINQYALRFIGCNKKDVKGKKINEVIPSSQLPHVMLSNLKKYGST
CCCEEEEEECCCCEEEEEHHHHHHCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHCCCE
LHINNRVGLVNSSPLFINDKIIGAVSVIQDVSDIIGMKEINEKFTKILENSQDMICFVDE
EEECCEEEEEECCCEEECCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEEEEEC
NGIINYLNPAYIKNFSKVSSDVIGKSIFDIAPNGLRAKVFKEKTLLKDVIHKKNGINVIS
CCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
TIDPLFIDGQFKGVISTSRPVSLIKELMSKLNKSEQELDYYKNEFLRQLSKNSSFNNIIG
ECCCEEECCEECEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHC
STRTLKDIMYMCQKASETTSTVLIRGESGTGKELIAKAIHNNSNRKNKPFVRVNCASIPE
CHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEHHHCCH
NLLESELFGYEKGAFTGAVQSKPGKFAIADTGTIFLDEIGDMPLSMQVKLLRVLQEREIE
HHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCEEEEEHHCCCCHHHHHHHHHHHHHHHHH
SVGGITPKNIDVRVIAATNRNLEEMIEEGSFREDLYYRLNVLGINLPPLRERKEDIPELA
HHCCCCCCCCEEEEEEECCCCHHHHHHCCCCHHHHEEEEEEEEECCCCCHHHHHHHHHHH
EHFITKLNKKLHKTILGIKQDALNLLIEYSWPGNIRELENIMERAINLCDGDYIDSSYLP
HHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHCCC
SYLKPVESKSFNLNIDIDHILPFEEYEKQIIEAAMKKYKSFNKAGKALGLTHRTISLKCK
HHHCCCCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHCHHHCEEEEEEEEEEE
KYNIDVKK
EEECCCCC
>Mature Secondary Structure
MYSRELIIKTPLGLHTRYSAMIVNKASEIESKYKVKLYIKKESYTDWLGISMLAILSLKV
CCCCCEEEECCCCCCCCHHHHEECCHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHHHC
LPNESILIGSKNEGMIEKLAVQSLLEFIDKNINNPIESEDSEIDEIIDASIVANEQVLES
CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHH
LPIGIVVIDIDQNIITINQYALRFIGCNKKDVKGKKINEVIPSSQLPHVMLSNLKKYGST
CCCEEEEEECCCCEEEEEHHHHHHCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHCCCE
LHINNRVGLVNSSPLFINDKIIGAVSVIQDVSDIIGMKEINEKFTKILENSQDMICFVDE
EEECCEEEEEECCCEEECCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEEEEEC
NGIINYLNPAYIKNFSKVSSDVIGKSIFDIAPNGLRAKVFKEKTLLKDVIHKKNGINVIS
CCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
TIDPLFIDGQFKGVISTSRPVSLIKELMSKLNKSEQELDYYKNEFLRQLSKNSSFNNIIG
ECCCEEECCEECEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHC
STRTLKDIMYMCQKASETTSTVLIRGESGTGKELIAKAIHNNSNRKNKPFVRVNCASIPE
CHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEHHHCCH
NLLESELFGYEKGAFTGAVQSKPGKFAIADTGTIFLDEIGDMPLSMQVKLLRVLQEREIE
HHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCEEEEEHHCCCCHHHHHHHHHHHHHHHHH
SVGGITPKNIDVRVIAATNRNLEEMIEEGSFREDLYYRLNVLGINLPPLRERKEDIPELA
HHCCCCCCCCEEEEEEECCCCHHHHHHCCCCHHHHEEEEEEEEECCCCCHHHHHHHHHHH
EHFITKLNKKLHKTILGIKQDALNLLIEYSWPGNIRELENIMERAINLCDGDYIDSSYLP
HHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHCCC
SYLKPVESKSFNLNIDIDHILPFEEYEKQIIEAAMKKYKSFNKAGKALGLTHRTISLKCK
HHHCCCCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHCHHHCEEEEEEEEEEE
KYNIDVKK
EEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]