| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is podK [H]
Identifier: 18310993
GI number: 18310993
Start: 2303526
End: 2306156
Strand: Reverse
Name: podK [H]
Synonym: CPE2011
Alternate gene names: 18310993
Gene position: 2306156-2303526 (Counterclockwise)
Preceding gene: 18310994
Following gene: 18310991
Centisome position: 76.07
GC content: 33.75
Gene sequence:
>2631_bases ATGGAAAAAAAGCAGTATGTTTATCTTTTTAATGAAGGTAACGCAAGTATGAAAAATTTATTAGGTGGAAAAGGTGCTAA CTTATCCGAGATGACTATTTTAGGAATACCAGTTCCACAAGGATTTACAGTAACAACTGAAGCATGTAATAAGTATTATG AAGATGACAAAAAGATTTCTCAAGATATTATTGAAGAGATTGAAAATAAAATGTCTGAGTTAGAAAAAATAACTGGCAAA AAATTTGGTTCTCTTGAAAATCCATTATTAGTATCAGTTAGATCTGGTGCAAGAGTTTCAATGCCGGGTATGATGGATAC AATTCTAAACCTTGGATTAAATGATGAATCAGTAGAAGCTATGGCTAAATTAACAAATAATCCAAGATTTGCTTATGATT CATATAGAAGATTTATTCAAATGTTTGCTGATGTTGTAATGGGTGTTGAAAAAAGACTTTTTGAAGATTTACTAGACGAA GTTAAGGAAGAAAAAGGTTATAAAATAGATACTGATTTAACAGCAGAGGATTTAAAAGATTTAGTAGTAAAATTTAAAGC GCTTTATAAAAAGGAAAAGGGAGAAGATTTTCCAAGTAATCCAAAAGAACAACTTATAGAGGCAGTTACAGCTGTATTTA GATCATGGAATAATCCAAGAGCAATTGTTTATAGAAGATTAAATGATATTCCAGGAGAATGGGGTACAGCAGTTAACGTT CAAGAGATGGTATTTGGAAATAAGGGAGAAACTTCAGGAACTGGAGTTGCATTTTCAAGAAACCCAGCTAATGGGGATAA TGAATTATATGGTGAGTATTTAATGAATGCTCAAGGTGAGGATGTTGTTGCAGGTATAAGAACACCAGAGCCAATAAGCC ATTTAGAAGCTCAAAACCCTACAATATATAAGCAATTTACAGATATAGTTAATACATTAGAAAAGCATTATAGAGATATG CAAGACATGGAATTTACAATAGAAGATGGAAAGTTATATTTCCTTCAAACTAGAAATGGTAAGAGAACTGCTCAAGCAGC TTTAAAAATAGCTGTTGATTTAGTTGAAGAAGGAATGTTAACTAAGGAAGAGGCTATATTAAAAGTTGAGCCTAAACAAT TAGATACATTACTTCACCCTGCTTTTGCATCTGATGGCTTAAAAGAAGCTAAAATAGTTGCAAAGGGATTACCAGCATCA CCAGGAGCTGCATGTGGTAAAATAGCTTTCACAGCTGAAGAAGCTAAGGAAAGAAAAGCAAATGGTGAAAAGGTTGTATT AGTAAGATTAGAGACTTCACCAGAAGATATAGAAGGTATGATTGCTGCAGAAGGTATCTTAACTGTTAGAGGAGGAATGA CTTCTCATGCAGCCGTTGTAGCAAGAGGAATGGGTACTTGCTGTGTAGCAGGATGTGGAGAATTAAAAGTTAATGAAGAA GCTAGAACTTTAGAAGTTAATGGACAAGTATTAACCTTTGATGATTATATCTCAATAGATGGTTCAACAGGACACATCTA TGCTGAACAAGTTAAGACAGTATCTCCAGAAATTACAGGACATTTCGCTACATTTATGGGATGGGCTGATGAAATAAGAA AGTTAAAGGTTAGAACTAATGCTGATACACCAAGAGATACTAAACAAGCTGTTGAATTTGGTGCAGAAGGTATTGGATTA TGTAGAACAGAGCATATGTTCTTTGCTGAAGATAGAATTTTAGCTGTTAGAGAAATGATTTTAGCTAAGAATGAGGATAG TAGAAGAGTTGCATTAGAAAAACTTCTACCAATGCAAAGAGAAGACTTTATAGGAATATATGAAGCTTTAGAAGAAAGAC CAGCTACAATAAGATTCTTAGATCCACCTCTACATGAATTCTTACCAAGTGAAGAGGAAGATATAAATGCCTTAGCTAAA GAAATTGGAGTAAGTCCAGCTGAGATTAAGAATGTAGTTGCTGAATTACATGAATTTAACCCAATGATGGGTCATAGAGG ATGTCGTTTAGCAGTATCTTATCCAGAGATAGCTGAAATGCAAACAAGAGCTGTCATAGAGGCTGCCATAGAAGTTAAAA AGAATAAAGGATACAATATAGTTCCTGAAATAATGATTCCTTTAATAGGTGAAATAAAAGAATTAAAATATGTTAAAAAT GTAGTTGTTGAAACAGCTAAGACAGTAATGGAAGAGAAAGGTGTTCAATTAGATTATAAGGTTGGAACAATGATTGAAAT TCCAAGAGCTGCTTTAACAGCTGATAAGATAGCAGAAGAGGCTGAGTTCTTCTCCTTTGGAACAAATGACTTGACTCAAA TGACCTTTGGATTCTCAAGAGATGATGCAGCTAAATTCTTAAAAGATTACTATGAAAAAGGAATATATGAGCAAGATCCA TTTGCTAAATTAGACCAAGAAGGCGTTGGAGAGCTTATGAGAATTGCTTGTGAAAAAGGTAAGGCAACAAGACCTGATAT TAAATTAGGTATATGTGGAGAACACGGTGGAGATCCTTCATCTGTTGAATTCTGCCACAACTTAGGATTAAATTACGTAA GTTGTTCACCTTATAGAGTTCCATTAGCAAGACTTGCAGCTGCACAAGCACAAGTTAAAAATAAAAGATAA
Upstream 100 bases:
>100_bases ATTTATGGTTAAAAAGAAAGATTAAATGGGTAACTATCGGGGGTAATACTCTGTTAGTATATAAAAATTCAACTATAGTA TTGAACGGAGGAGTATTGAG
Downstream 100 bases:
>100_bases TAAATAAGATTATATAAAATAAAGGAGTATTCATTATGAATACTCCTTTATTTAAACTTTAATTTTAAATTCAGTAGAAA ACAATGTTCTAAGTTCTCCA
Product: pyruvate phosphate dikinase
Products: NA
Alternate protein names: Pyruvate, orthophosphate dikinase [H]
Number of amino acids: Translated: 876; Mature: 876
Protein sequence:
>876_residues MEKKQYVYLFNEGNASMKNLLGGKGANLSEMTILGIPVPQGFTVTTEACNKYYEDDKKISQDIIEEIENKMSELEKITGK KFGSLENPLLVSVRSGARVSMPGMMDTILNLGLNDESVEAMAKLTNNPRFAYDSYRRFIQMFADVVMGVEKRLFEDLLDE VKEEKGYKIDTDLTAEDLKDLVVKFKALYKKEKGEDFPSNPKEQLIEAVTAVFRSWNNPRAIVYRRLNDIPGEWGTAVNV QEMVFGNKGETSGTGVAFSRNPANGDNELYGEYLMNAQGEDVVAGIRTPEPISHLEAQNPTIYKQFTDIVNTLEKHYRDM QDMEFTIEDGKLYFLQTRNGKRTAQAALKIAVDLVEEGMLTKEEAILKVEPKQLDTLLHPAFASDGLKEAKIVAKGLPAS PGAACGKIAFTAEEAKERKANGEKVVLVRLETSPEDIEGMIAAEGILTVRGGMTSHAAVVARGMGTCCVAGCGELKVNEE ARTLEVNGQVLTFDDYISIDGSTGHIYAEQVKTVSPEITGHFATFMGWADEIRKLKVRTNADTPRDTKQAVEFGAEGIGL CRTEHMFFAEDRILAVREMILAKNEDSRRVALEKLLPMQREDFIGIYEALEERPATIRFLDPPLHEFLPSEEEDINALAK EIGVSPAEIKNVVAELHEFNPMMGHRGCRLAVSYPEIAEMQTRAVIEAAIEVKKNKGYNIVPEIMIPLIGEIKELKYVKN VVVETAKTVMEEKGVQLDYKVGTMIEIPRAALTADKIAEEAEFFSFGTNDLTQMTFGFSRDDAAKFLKDYYEKGIYEQDP FAKLDQEGVGELMRIACEKGKATRPDIKLGICGEHGGDPSSVEFCHNLGLNYVSCSPYRVPLARLAAAQAQVKNKR
Sequences:
>Translated_876_residues MEKKQYVYLFNEGNASMKNLLGGKGANLSEMTILGIPVPQGFTVTTEACNKYYEDDKKISQDIIEEIENKMSELEKITGK KFGSLENPLLVSVRSGARVSMPGMMDTILNLGLNDESVEAMAKLTNNPRFAYDSYRRFIQMFADVVMGVEKRLFEDLLDE VKEEKGYKIDTDLTAEDLKDLVVKFKALYKKEKGEDFPSNPKEQLIEAVTAVFRSWNNPRAIVYRRLNDIPGEWGTAVNV QEMVFGNKGETSGTGVAFSRNPANGDNELYGEYLMNAQGEDVVAGIRTPEPISHLEAQNPTIYKQFTDIVNTLEKHYRDM QDMEFTIEDGKLYFLQTRNGKRTAQAALKIAVDLVEEGMLTKEEAILKVEPKQLDTLLHPAFASDGLKEAKIVAKGLPAS PGAACGKIAFTAEEAKERKANGEKVVLVRLETSPEDIEGMIAAEGILTVRGGMTSHAAVVARGMGTCCVAGCGELKVNEE ARTLEVNGQVLTFDDYISIDGSTGHIYAEQVKTVSPEITGHFATFMGWADEIRKLKVRTNADTPRDTKQAVEFGAEGIGL CRTEHMFFAEDRILAVREMILAKNEDSRRVALEKLLPMQREDFIGIYEALEERPATIRFLDPPLHEFLPSEEEDINALAK EIGVSPAEIKNVVAELHEFNPMMGHRGCRLAVSYPEIAEMQTRAVIEAAIEVKKNKGYNIVPEIMIPLIGEIKELKYVKN VVVETAKTVMEEKGVQLDYKVGTMIEIPRAALTADKIAEEAEFFSFGTNDLTQMTFGFSRDDAAKFLKDYYEKGIYEQDP FAKLDQEGVGELMRIACEKGKATRPDIKLGICGEHGGDPSSVEFCHNLGLNYVSCSPYRVPLARLAAAQAQVKNKR >Mature_876_residues MEKKQYVYLFNEGNASMKNLLGGKGANLSEMTILGIPVPQGFTVTTEACNKYYEDDKKISQDIIEEIENKMSELEKITGK KFGSLENPLLVSVRSGARVSMPGMMDTILNLGLNDESVEAMAKLTNNPRFAYDSYRRFIQMFADVVMGVEKRLFEDLLDE VKEEKGYKIDTDLTAEDLKDLVVKFKALYKKEKGEDFPSNPKEQLIEAVTAVFRSWNNPRAIVYRRLNDIPGEWGTAVNV QEMVFGNKGETSGTGVAFSRNPANGDNELYGEYLMNAQGEDVVAGIRTPEPISHLEAQNPTIYKQFTDIVNTLEKHYRDM QDMEFTIEDGKLYFLQTRNGKRTAQAALKIAVDLVEEGMLTKEEAILKVEPKQLDTLLHPAFASDGLKEAKIVAKGLPAS PGAACGKIAFTAEEAKERKANGEKVVLVRLETSPEDIEGMIAAEGILTVRGGMTSHAAVVARGMGTCCVAGCGELKVNEE ARTLEVNGQVLTFDDYISIDGSTGHIYAEQVKTVSPEITGHFATFMGWADEIRKLKVRTNADTPRDTKQAVEFGAEGIGL CRTEHMFFAEDRILAVREMILAKNEDSRRVALEKLLPMQREDFIGIYEALEERPATIRFLDPPLHEFLPSEEEDINALAK EIGVSPAEIKNVVAELHEFNPMMGHRGCRLAVSYPEIAEMQTRAVIEAAIEVKKNKGYNIVPEIMIPLIGEIKELKYVKN VVVETAKTVMEEKGVQLDYKVGTMIEIPRAALTADKIAEEAEFFSFGTNDLTQMTFGFSRDDAAKFLKDYYEKGIYEQDP FAKLDQEGVGELMRIACEKGKATRPDIKLGICGEHGGDPSSVEFCHNLGLNYVSCSPYRVPLARLAAAQAQVKNKR
Specific function: Catalyzes the reversible phosphorylation of pyruvate and phosphate. In E.histolytica and C.symbiosus, PPDK functions in the direction of ATP synthesis [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI1787994, Length=908, Percent_Identity=24.1189427312775, Blast_Score=117, Evalue=4e-27, Organism=Escherichia coli, GI1788756, Length=465, Percent_Identity=24.7311827956989, Blast_Score=113, Evalue=6e-26, Organism=Escherichia coli, GI48994992, Length=452, Percent_Identity=25.2212389380531, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI1789193, Length=418, Percent_Identity=23.6842105263158, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI1788726, Length=440, Percent_Identity=23.4090909090909, Blast_Score=78, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR010121 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.1 [H]
Molecular weight: Translated: 97414; Mature: 97414
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE ; PS00742 PEP_ENZYMES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKKQYVYLFNEGNASMKNLLGGKGANLSEMTILGIPVPQGFTVTTEACNKYYEDDKKIS CCCCEEEEEEECCCHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEHHHHHHHHHHHHHHH QDIIEEIENKMSELEKITGKKFGSLENPLLVSVRSGARVSMPGMMDTILNLGLNDESVEA HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEECCHHHHHHHHCCCCHHHHHH MAKLTNNPRFAYDSYRRFIQMFADVVMGVEKRLFEDLLDEVKEEKGYKIDTDLTAEDLKD HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHH LVVKFKALYKKEKGEDFPSNPKEQLIEAVTAVFRSWNNPRAIVYRRLNDIPGEWGTAVNV HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCH QEMVFGNKGETSGTGVAFSRNPANGDNELYGEYLMNAQGEDVVAGIRTPEPISHLEAQNP HHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHCCCCC TIYKQFTDIVNTLEKHYRDMQDMEFTIEDGKLYFLQTRNGKRTAQAALKIAVDLVEEGML HHHHHHHHHHHHHHHHHCCHHCCEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHCCCC TKEEAILKVEPKQLDTLLHPAFASDGLKEAKIVAKGLPASPGAACGKIAFTAEEAKERKA CCCCCEEEECHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHC NGEKVVLVRLETSPEDIEGMIAAEGILTVRGGMTSHAAVVARGMGTCCVAGCGELKVNEE CCCEEEEEEECCCCHHHHHHEEECCEEEECCCCCHHHHHHHHCCCHHHHCCCCCEEECCC ARTLEVNGQVLTFDDYISIDGSTGHIYAEQVKTVSPEITGHFATFMGWADEIRKLKVRTN CEEEEECCEEEEEECEEEECCCCCCEEHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEECC ADTPRDTKQAVEFGAEGIGLCRTEHMFFAEDRILAVREMILAKNEDSRRVALEKLLPMQR CCCCCHHHHHHHHCCCCCCEEEECCEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCH EDFIGIYEALEERPATIRFLDPPLHEFLPSEEEDINALAKEIGVSPAEIKNVVAELHEFN HHHHHHHHHHHCCCCEEEEECCCHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCC PMMGHRGCRLAVSYPEIAEMQTRAVIEAAIEVKKNKGYNIVPEIMIPLIGEIKELKYVKN CCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH VVVETAKTVMEEKGVQLDYKVGTMIEIPRAALTADKIAEEAEFFSFGTNDLTQMTFGFSR HHHHHHHHHHHHCCCEEEEECCCEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCC DDAAKFLKDYYEKGIYEQDPFAKLDQEGVGELMRIACEKGKATRPDIKLGICGEHGGDPS HHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCH SVEFCHNLGLNYVSCSPYRVPLARLAAAQAQVKNKR HHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCC >Mature Secondary Structure MEKKQYVYLFNEGNASMKNLLGGKGANLSEMTILGIPVPQGFTVTTEACNKYYEDDKKIS CCCCEEEEEEECCCHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEHHHHHHHHHHHHHHH QDIIEEIENKMSELEKITGKKFGSLENPLLVSVRSGARVSMPGMMDTILNLGLNDESVEA HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEECCHHHHHHHHCCCCHHHHHH MAKLTNNPRFAYDSYRRFIQMFADVVMGVEKRLFEDLLDEVKEEKGYKIDTDLTAEDLKD HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHH LVVKFKALYKKEKGEDFPSNPKEQLIEAVTAVFRSWNNPRAIVYRRLNDIPGEWGTAVNV HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCH QEMVFGNKGETSGTGVAFSRNPANGDNELYGEYLMNAQGEDVVAGIRTPEPISHLEAQNP HHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHCCCCC TIYKQFTDIVNTLEKHYRDMQDMEFTIEDGKLYFLQTRNGKRTAQAALKIAVDLVEEGML HHHHHHHHHHHHHHHHHCCHHCCEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHCCCC TKEEAILKVEPKQLDTLLHPAFASDGLKEAKIVAKGLPASPGAACGKIAFTAEEAKERKA CCCCCEEEECHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHC NGEKVVLVRLETSPEDIEGMIAAEGILTVRGGMTSHAAVVARGMGTCCVAGCGELKVNEE CCCEEEEEEECCCCHHHHHHEEECCEEEECCCCCHHHHHHHHCCCHHHHCCCCCEEECCC ARTLEVNGQVLTFDDYISIDGSTGHIYAEQVKTVSPEITGHFATFMGWADEIRKLKVRTN CEEEEECCEEEEEECEEEECCCCCCEEHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEECC ADTPRDTKQAVEFGAEGIGLCRTEHMFFAEDRILAVREMILAKNEDSRRVALEKLLPMQR CCCCCHHHHHHHHCCCCCCEEEECCEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCH EDFIGIYEALEERPATIRFLDPPLHEFLPSEEEDINALAKEIGVSPAEIKNVVAELHEFN HHHHHHHHHHHCCCCEEEEECCCHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCC PMMGHRGCRLAVSYPEIAEMQTRAVIEAAIEVKKNKGYNIVPEIMIPLIGEIKELKYVKN CCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH VVVETAKTVMEEKGVQLDYKVGTMIEIPRAALTADKIAEEAEFFSFGTNDLTQMTFGFSR HHHHHHHHHHHHCCCEEEEECCCEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCC DDAAKFLKDYYEKGIYEQDPFAKLDQEGVGELMRIACEKGKATRPDIKLGICGEHGGDPS HHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCH SVEFCHNLGLNYVSCSPYRVPLARLAAAQAQVKNKR HHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2176881; 6257292; 11695893; 11468288; 8610096; 9753432 [H]