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The map label for this gene is ybgI [C]

Identifier: 18310986

GI number: 18310986

Start: 2295468

End: 2296256

Strand: Reverse

Name: ybgI [C]

Synonym: CPE2004

Alternate gene names: 18310986

Gene position: 2296256-2295468 (Counterclockwise)

Preceding gene: 18310987

Following gene: 18310985

Centisome position: 75.75

GC content: 29.28

Gene sequence:

>789_bases
ATGAAATTAAATGACATTATAAATATAATAGAAGATATTGCCCCAGTTAATTTAAAAGAAGGCTTTGATAATGTAGGCCT
TATGGTTGGGGATAGAGAAAAAAATATAACTAAGATTTTATTAGCTTTAGATTGTACTGAAGAGGTTATTAAAGAGGCTA
AGGAAATGGGTGCAGAGCTTATTTTAACTCATCATCCACTTTTATTTAGAAAGCCAAGTACAATAACAACAGACACTCTA
TTAGGTAGAAAAATTATAAGCTTAATAAAAAATGATATAAATCTTTATTCAGCGCACACTAACTGGGACTCAGTTAAAGG
TGGATTAAATGATACCTTAGTTGAAATCTTAGGATTTAATAAAGGAATCATAATGGATAAAAGCCCAGTTGATTCTGAGG
CTGGAATTGGTAGAGTAGTAGAGTTAACTAAGGAAATGACTGTTCTAGAAATAATAAATCTTATAAAATCTTCTTTAGGT
GTTAAGAATTTAAGATATGCAGGAGATTTAAATGAAGTTATTAAGAAAATTGCTATTGTAAATGGTAGTGGGCAAGATTT
CTTTGGAGATGCAAAAAAACTTGGAGCAGATCTAATAATAACTGGAGATACAACATATCATTTTGTTTCAGATTATAAGG
AAATGGGATTAAATATTTTAGACATAGGACATTTTAATTCAGAGTGGCCTGTTTTAATTAAGGTAAGTGAAAAAGTAAAA
GAAAGATTAGATTCAGATGTGGAATTTATTGTTTCAAAAGAGGCTAAAGATCCCTTTGAATTCATATAA

Upstream 100 bases:

>100_bases
GTGAGACTATATTAAGTTTTATAAAAGAAGATACAGAAGCGGCTAAAAAGAGAAAAAGTGATTTAGAAGAAAAGATAAAT
AAACTTAAGGGGATGTTATA

Downstream 100 bases:

>100_bases
TTTTTTTTGGTGTATAATATTACAATTAAAACATAATATTGGATAAATAACATTATTTGAATTTATGTGATTTTATTATA
TAATAGGTATGGTGTGGTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MKLNDIINIIEDIAPVNLKEGFDNVGLMVGDREKNITKILLALDCTEEVIKEAKEMGAELILTHHPLLFRKPSTITTDTL
LGRKIISLIKNDINLYSAHTNWDSVKGGLNDTLVEILGFNKGIIMDKSPVDSEAGIGRVVELTKEMTVLEIINLIKSSLG
VKNLRYAGDLNEVIKKIAIVNGSGQDFFGDAKKLGADLIITGDTTYHFVSDYKEMGLNILDIGHFNSEWPVLIKVSEKVK
ERLDSDVEFIVSKEAKDPFEFI

Sequences:

>Translated_262_residues
MKLNDIINIIEDIAPVNLKEGFDNVGLMVGDREKNITKILLALDCTEEVIKEAKEMGAELILTHHPLLFRKPSTITTDTL
LGRKIISLIKNDINLYSAHTNWDSVKGGLNDTLVEILGFNKGIIMDKSPVDSEAGIGRVVELTKEMTVLEIINLIKSSLG
VKNLRYAGDLNEVIKKIAIVNGSGQDFFGDAKKLGADLIITGDTTYHFVSDYKEMGLNILDIGHFNSEWPVLIKVSEKVK
ERLDSDVEFIVSKEAKDPFEFI
>Mature_262_residues
MKLNDIINIIEDIAPVNLKEGFDNVGLMVGDREKNITKILLALDCTEEVIKEAKEMGAELILTHHPLLFRKPSTITTDTL
LGRKIISLIKNDINLYSAHTNWDSVKGGLNDTLVEILGFNKGIIMDKSPVDSEAGIGRVVELTKEMTVLEIINLIKSSLG
VKNLRYAGDLNEVIKKIAIVNGSGQDFFGDAKKLGADLIITGDTTYHFVSDYKEMGLNILDIGHFNSEWPVLIKVSEKVK
ERLDSDVEFIVSKEAKDPFEFI

Specific function: Unknown

COG id: COG0327

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0135 (NIF3) family

Homologues:

Organism=Homo sapiens, GI215272362, Length=142, Percent_Identity=33.8028169014084, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI209862879, Length=142, Percent_Identity=33.8028169014084, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI215272360, Length=142, Percent_Identity=33.8028169014084, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI56605983, Length=142, Percent_Identity=33.8028169014084, Blast_Score=80, Evalue=1e-15,
Organism=Escherichia coli, GI1786928, Length=227, Percent_Identity=29.9559471365639, Blast_Score=95, Evalue=5e-21,
Organism=Saccharomyces cerevisiae, GI6321217, Length=282, Percent_Identity=29.7872340425532, Blast_Score=103, Evalue=2e-23,
Organism=Drosophila melanogaster, GI19921430, Length=268, Percent_Identity=34.3283582089552, Blast_Score=134, Evalue=5e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2004_CLOPE (Q8XIV9)

Other databases:

- EMBL:   BA000016
- RefSeq:   NP_562920.1
- ProteinModelPortal:   Q8XIV9
- SMR:   Q8XIV9
- GeneID:   990319
- GenomeReviews:   BA000016_GR
- KEGG:   cpe:CPE2004
- NMPDR:   fig|195102.1.peg.2067
- HOGENOM:   HBG554751
- OMA:   LAVEELW
- PhylomeDB:   Q8XIV9
- ProtClustDB:   CLSK882748
- BioCyc:   CPER195102:CPE2004-MONOMER
- InterPro:   IPR002678
- PANTHER:   PTHR13799
- TIGRFAMs:   TIGR00486

Pfam domain/function: PF01784 NIF3; SSF102705 interacting_NIF3

EC number: NA

Molecular weight: Translated: 29128; Mature: 29128

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNDIINIIEDIAPVNLKEGFDNVGLMVGDREKNITKILLALDCTEEVIKEAKEMGAEL
CCHHHHHHHHHHHCCCCHHCCCCCCCEEECCCCCCHHHHHHHHHCHHHHHHHHHHCCHHE
ILTHHPLLFRKPSTITTDTLLGRKIISLIKNDINLYSAHTNWDSVKGGLNDTLVEILGFN
EEECCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHCCCCHHHHHHHHCCC
KGIIMDKSPVDSEAGIGRVVELTKEMTVLEIINLIKSSLGVKNLRYAGDLNEVIKKIAIV
CCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHEE
NGSGQDFFGDAKKLGADLIITGDTTYHFVSDYKEMGLNILDIGHFNSEWPVLIKVSEKVK
CCCCCCCCCCHHHCCCCEEEECCCHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEHHHHH
ERLDSDVEFIVSKEAKDPFEFI
HHHCCCHHEEHCCCCCCCCCCC
>Mature Secondary Structure
MKLNDIINIIEDIAPVNLKEGFDNVGLMVGDREKNITKILLALDCTEEVIKEAKEMGAEL
CCHHHHHHHHHHHCCCCHHCCCCCCCEEECCCCCCHHHHHHHHHCHHHHHHHHHHCCHHE
ILTHHPLLFRKPSTITTDTLLGRKIISLIKNDINLYSAHTNWDSVKGGLNDTLVEILGFN
EEECCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHCCCCHHHHHHHHCCC
KGIIMDKSPVDSEAGIGRVVELTKEMTVLEIINLIKSSLGVKNLRYAGDLNEVIKKIAIV
CCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHEE
NGSGQDFFGDAKKLGADLIITGDTTYHFVSDYKEMGLNILDIGHFNSEWPVLIKVSEKVK
CCCCCCCCCCHHHCCCCEEEECCCHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEHHHHH
ERLDSDVEFIVSKEAKDPFEFI
HHHCCCHHEEHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11792842