| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310984
Identifier: 18310984
GI number: 18310984
Start: 2293398
End: 2293955
Strand: Reverse
Name: 18310984
Synonym: CPE2002
Alternate gene names: NA
Gene position: 2293955-2293398 (Counterclockwise)
Preceding gene: 18310985
Following gene: 18310983
Centisome position: 75.67
GC content: 27.06
Gene sequence:
>558_bases ATGAGAAATTCAAAAAGTTTAAAGTTAACAATAATGGGAATAGGAATAGCATTAAATATAATTGGAGCTTTTATAGCCTT AAATTTAAGATTACCTATTTATTTAGATTCTATAGGTACAATTATGGTTGGATTTGTATTAGGGCCTGTTTATGGAATGG TAACTGGAGTCTTAGGAAGTGTGGTTAGTGGAATAACCTTTGATATATATTCTTTATATTTTGCACCAGTTCAAATATTT ACTGGATTTTTTGCAGGATATTTTTATGAAAAAGGGCTTATGAAAGGAAAGAAATTATTTTTAAGCGTCTTTGTAATGAC TCTATTTGTAAGTTTTACAGGAGCTTGTTTAACTGCCTATATATTTGGTGGTATTACTTCATCAGGTTCTAGTTATATAA TAGTTATTTTAAATAATTTAGGGGTTAACCCTGTGGTAAGTGCTTTTATAACACAATTTTTAACAGATTATTGTGATAAA TTAGTAACAGTTTTAATAATGTTACAGGTTGTTATAAGATTGCCTAAAAATATTTTGTTAAGAGTACAGAATAATTAA
Upstream 100 bases:
>100_bases GGTAAGTTTTCTTAATAAAATATTTCCGATCCATAAAGAGGATATTAAAAATGTACTTAATAATCCAAAGTATGGTATTT AATAGGGAGGGAATATTAAT
Downstream 100 bases:
>100_bases ATGGAGATGAAAAAATTTTGGATAGATATAATGTTATAGATAATAAAAATAATAGAGAGATAGTTCTTCTAAAATCTTTT CCTTGTGTATGGGGAAAGTG
Product: hypothetical protein
Products: NA
Alternate protein names: Signal Transduction Histidine Kinase LytS; ABC Transport System Permease Protein; 5TM Receptors Of LytS-YhcK Type Transmembrane Region; Phosphate/Sulphate Permease; ABC-Type Transport System
Number of amino acids: Translated: 185; Mature: 185
Protein sequence:
>185_residues MRNSKSLKLTIMGIGIALNIIGAFIALNLRLPIYLDSIGTIMVGFVLGPVYGMVTGVLGSVVSGITFDIYSLYFAPVQIF TGFFAGYFYEKGLMKGKKLFLSVFVMTLFVSFTGACLTAYIFGGITSSGSSYIIVILNNLGVNPVVSAFITQFLTDYCDK LVTVLIMLQVVIRLPKNILLRVQNN
Sequences:
>Translated_185_residues MRNSKSLKLTIMGIGIALNIIGAFIALNLRLPIYLDSIGTIMVGFVLGPVYGMVTGVLGSVVSGITFDIYSLYFAPVQIF TGFFAGYFYEKGLMKGKKLFLSVFVMTLFVSFTGACLTAYIFGGITSSGSSYIIVILNNLGVNPVVSAFITQFLTDYCDK LVTVLIMLQVVIRLPKNILLRVQNN >Mature_185_residues MRNSKSLKLTIMGIGIALNIIGAFIALNLRLPIYLDSIGTIMVGFVLGPVYGMVTGVLGSVVSGITFDIYSLYFAPVQIF TGFFAGYFYEKGLMKGKKLFLSVFVMTLFVSFTGACLTAYIFGGITSSGSSYIIVILNNLGVNPVVSAFITQFLTDYCDK LVTVLIMLQVVIRLPKNILLRVQNN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20157; Mature: 20157
Theoretical pI: Translated: 9.86; Mature: 9.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNSKSLKLTIMGIGIALNIIGAFIALNLRLPIYLDSIGTIMVGFVLGPVYGMVTGVLGS CCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH VVSGITFDIYSLYFAPVQIFTGFFAGYFYEKGLMKGKKLFLSVFVMTLFVSFTGACLTAY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IFGGITSSGSSYIIVILNNLGVNPVVSAFITQFLTDYCDKLVTVLIMLQVVIRLPKNILL HHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEE RVQNN EECCC >Mature Secondary Structure MRNSKSLKLTIMGIGIALNIIGAFIALNLRLPIYLDSIGTIMVGFVLGPVYGMVTGVLGS CCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH VVSGITFDIYSLYFAPVQIFTGFFAGYFYEKGLMKGKKLFLSVFVMTLFVSFTGACLTAY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IFGGITSSGSSYIIVILNNLGVNPVVSAFITQFLTDYCDKLVTVLIMLQVVIRLPKNILL HHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEE RVQNN EECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA