| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310981
Identifier: 18310981
GI number: 18310981
Start: 2290351
End: 2291361
Strand: Reverse
Name: 18310981
Synonym: CPE1999
Alternate gene names: NA
Gene position: 2291361-2290351 (Counterclockwise)
Preceding gene: 18310982
Following gene: 18310980
Centisome position: 75.59
GC content: 32.34
Gene sequence:
>1011_bases ATGGGGAGAGATAGTAGAAAGAAGAGGAGAAGTAAAAAGAAGTGGAAGACTATAGCGATATTTATTGCTTTTGAATTCAT ATTCACTGCTGTTACAGCGCCTTTTATACTTTTATATGGACCATTTGAAAATGCTAAAAGGACTTATGTAGGGGCAGCCA TGACTAGTTTTAGTCATCAGTGGATGGCAACTACATTTTTATCAGATGAAAAAATTAATGAGATATTAAATTCTAATATT GAGGATACAAATACAAATCATAAAAATACAAATATAAAGACAAATGTTAATTTACCAACTAAACATGATAATAGTATAGA ATTATACTCTTTTGAAAACTTTAAATATAGTGGATATTATATAGTGGTAAAAGATCCTACTAGAGTAAAAATAGGAGTTT CTAAATATCTTGGAGAAGAAGGACAAACTACTTCTGAAATAGCTAGGGAATACAATGCTGTTGCGGCTGTAAATGGAGGA GCTTTTACAGATAAATCTAGTACTGCTCAATGGACTGGTAATGGGGGAACTCCTGCTGGAATAGTTATATCAGAGGGGAA ATTGGTTTATAAAGATGTACCAGACGATGAAAAAATTGAGTTAGTTGGCATAACAAAAGAAGGAAAAATGATTGCAGGTA TGTATTCATTTAATAATCTTAAAGAATTAAATGTTAAAGAAGCTGTAAGTTTTGGACCTGTTTTAGTTAAAGAAGGAGAA CCTACACCTATGAAAGGTGATGGTGGATGGGGAGTTGCTCCAAGAACTGCTATGGGACAAAGAGCTGATGGATCAATAGT AATGTTAGTTATTGATGGTAGAAGTTTAACAAGTGGAGGAGCTACTTTAAAGGAATTACAGGAAGTATTATTAAATACTT GTAATGTAGTTACTGCTATAAACCTTGATGGTGGTAAATCAACTACTATGTACTTAAATGGGAAAGTAATAAATAATCCA GCATCAAATGTAGGGGAGAGATCTATTCCTTCAGCTATAATAGTAAAATAA
Upstream 100 bases:
>100_bases ATGTATAATAGATAAGTGATATTTTAAAAACGATAGAATGTAAGGGTTAGTTGGTTTAGATTACAAAGGAAATTTAATTA TTTTAAATTAAGGAGGAAAA
Downstream 100 bases:
>100_bases CAAAGAGGAGAATTTTATGGATAAATTAAAGCAATTTTTAAAGTGGGGACTATTGTCTGTAATTTTACAATGCTTAGTTT TATTTGTTTTTGATAAATTT
Product: hypothetical protein
Products: NA
Alternate protein names: Gram-Positive Signal Peptide YSIRK Family; LPXTG-Motif Cell Wall Anchor Domain Protein; Exopolysaccharide Biosynthesis Related Protein; Peptidase; Copper Amine Oxidase Domain-Containing Protein
Number of amino acids: Translated: 336; Mature: 335
Protein sequence:
>336_residues MGRDSRKKRRSKKKWKTIAIFIAFEFIFTAVTAPFILLYGPFENAKRTYVGAAMTSFSHQWMATTFLSDEKINEILNSNI EDTNTNHKNTNIKTNVNLPTKHDNSIELYSFENFKYSGYYIVVKDPTRVKIGVSKYLGEEGQTTSEIAREYNAVAAVNGG AFTDKSSTAQWTGNGGTPAGIVISEGKLVYKDVPDDEKIELVGITKEGKMIAGMYSFNNLKELNVKEAVSFGPVLVKEGE PTPMKGDGGWGVAPRTAMGQRADGSIVMLVIDGRSLTSGGATLKELQEVLLNTCNVVTAINLDGGKSTTMYLNGKVINNP ASNVGERSIPSAIIVK
Sequences:
>Translated_336_residues MGRDSRKKRRSKKKWKTIAIFIAFEFIFTAVTAPFILLYGPFENAKRTYVGAAMTSFSHQWMATTFLSDEKINEILNSNI EDTNTNHKNTNIKTNVNLPTKHDNSIELYSFENFKYSGYYIVVKDPTRVKIGVSKYLGEEGQTTSEIAREYNAVAAVNGG AFTDKSSTAQWTGNGGTPAGIVISEGKLVYKDVPDDEKIELVGITKEGKMIAGMYSFNNLKELNVKEAVSFGPVLVKEGE PTPMKGDGGWGVAPRTAMGQRADGSIVMLVIDGRSLTSGGATLKELQEVLLNTCNVVTAINLDGGKSTTMYLNGKVINNP ASNVGERSIPSAIIVK >Mature_335_residues GRDSRKKRRSKKKWKTIAIFIAFEFIFTAVTAPFILLYGPFENAKRTYVGAAMTSFSHQWMATTFLSDEKINEILNSNIE DTNTNHKNTNIKTNVNLPTKHDNSIELYSFENFKYSGYYIVVKDPTRVKIGVSKYLGEEGQTTSEIAREYNAVAAVNGGA FTDKSSTAQWTGNGGTPAGIVISEGKLVYKDVPDDEKIELVGITKEGKMIAGMYSFNNLKELNVKEAVSFGPVLVKEGEP TPMKGDGGWGVAPRTAMGQRADGSIVMLVIDGRSLTSGGATLKELQEVLLNTCNVVTAINLDGGKSTTMYLNGKVINNPA SNVGERSIPSAIIVK
Specific function: Unknown
COG id: COG4632
COG function: function code G; Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36632; Mature: 36501
Theoretical pI: Translated: 9.44; Mature: 9.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRDSRKKRRSKKKWKTIAIFIAFEFIFTAVTAPFILLYGPFENAKRTYVGAAMTSFSHQ CCCCHHHHHHHHHHHHEEEEEHHHHHHHHHHHHCEEEEECCCCCCCEEEEHHHHHHCCCC WMATTFLSDEKINEILNSNIEDTNTNHKNTNIKTNVNLPTKHDNSIELYSFENFKYSGYY EEEEEECCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCEEECCEE IVVKDPTRVKIGVSKYLGEEGQTTSEIAREYNAVAAVNGGAFTDKSSTAQWTGNGGTPAG EEEECCCEEEEEHHHHCCCCCCCHHHHHHHHCEEEEECCCCCCCCCCCEEEECCCCCCEE IVISEGKLVYKDVPDDEKIELVGITKEGKMIAGMYSFNNLKELNVKEAVSFGPVLVKEGE EEEECCEEEEECCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHCCCCEEEECCC PTPMKGDGGWGVAPRTAMGQRADGSIVMLVIDGRSLTSGGATLKELQEVLLNTCNVVTAI CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEE NLDGGKSTTMYLNGKVINNPASNVGERSIPSAIIVK EECCCCEEEEEECCEEECCCCCCCCCCCCCCEEEEC >Mature Secondary Structure GRDSRKKRRSKKKWKTIAIFIAFEFIFTAVTAPFILLYGPFENAKRTYVGAAMTSFSHQ CCCHHHHHHHHHHHHEEEEEHHHHHHHHHHHHCEEEEECCCCCCCEEEEHHHHHHCCCC WMATTFLSDEKINEILNSNIEDTNTNHKNTNIKTNVNLPTKHDNSIELYSFENFKYSGYY EEEEEECCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCEEECCEE IVVKDPTRVKIGVSKYLGEEGQTTSEIAREYNAVAAVNGGAFTDKSSTAQWTGNGGTPAG EEEECCCEEEEEHHHHCCCCCCCHHHHHHHHCEEEEECCCCCCCCCCCEEEECCCCCCEE IVISEGKLVYKDVPDDEKIELVGITKEGKMIAGMYSFNNLKELNVKEAVSFGPVLVKEGE EEEECCEEEEECCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHCCCCEEEECCC PTPMKGDGGWGVAPRTAMGQRADGSIVMLVIDGRSLTSGGATLKELQEVLLNTCNVVTAI CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEE NLDGGKSTTMYLNGKVINNPASNVGERSIPSAIIVK EECCCCEEEEEECCEEECCCCCCCCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA