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The map label for this gene is ysgA [H]

Identifier: 18310871

GI number: 18310871

Start: 2171082

End: 2171855

Strand: Reverse

Name: ysgA [H]

Synonym: CPE1889

Alternate gene names: 18310871

Gene position: 2171855-2171082 (Counterclockwise)

Preceding gene: 18310872

Following gene: 18310870

Centisome position: 71.64

GC content: 28.29

Gene sequence:

>774_bases
TTGTTAGAAATCGAAAGTAAAAACAATAACTTATTTAAAGAGATAAAAAAGTTAAAAGAAAAAAAGCATAGAATAAAGAG
TAATAAGTATCTTATTGAAGGTTTAAGATTTGTAGAGGAAGCTATAAAAAGTAAAGTATCAATAGATTCAATAATTTTTA
CAGAAAGTTTTAAGGAGAAAAATCCTGACTTATTCTTAAAAATTAATGAAAATATAAAGCTTATACAAATGAATGAAGCT
CTTTTAAAACAACTTTGTTCAACGGAAAATCCACAAGGAATTGTTGGTGTTATAAATATGCAAAACAAGGAATTAAAAAG
TGGAGAGCTAGTTGTTTTAGTAGATAAGGTTCAAGATCCAGGAAATATGGGAACAATAATAAGAACAGCTCATGCAGCAG
GTGCAGCAGGAATAGTAATGACTAAAGGTACTGTTGACATATATAACGATAAGACTCTAAGATCAACAATGGGTTCAATA
TTTTATATTCCAATTGTTGAGGATGATTCTTTAGATTTTGTAAAATCATTAAAGAAGGAAGGGTATAAACTTGTAGTAAG
TTCTCTTCAGGGAAAAAATAATTTCTTTGAAGAAAATCTTCAAGGAAAAGTTATGATAGCTGTTGGTAATGAGGGAAATG
GTGTCAGTGATGAAGTATATGATATTGCAGACATAAAAGTTAAAATTCCTATGCCTGGTGAAGCTGAATCTTTAAATGTA
GCTGTAGCTACTTCTATAATGATATATGAAAAGATAAGACAATCATTTAAATAA

Upstream 100 bases:

>100_bases
AAGGATGACATAGTAGTTGCTATAGGTTCTGCAGAGGATTTAACAAAATTAGAAGGAAAGATATTTAGACATTAATATCT
TCTAGAAAGGATTATTTGCT

Downstream 100 bases:

>100_bases
ATCAAGAGATTTTATAAAAAAGACTTTTAATAAAACTTACAAATATATTCTAAGAATTACTAGAGATTCTTTTAATACTA
TTTGTAAGTTTTATTATTAA

Product: RNA methyltransferase, TrmH family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MLEIESKNNNLFKEIKKLKEKKHRIKSNKYLIEGLRFVEEAIKSKVSIDSIIFTESFKEKNPDLFLKINENIKLIQMNEA
LLKQLCSTENPQGIVGVINMQNKELKSGELVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSI
FYIPIVEDDSLDFVKSLKKEGYKLVVSSLQGKNNFFEENLQGKVMIAVGNEGNGVSDEVYDIADIKVKIPMPGEAESLNV
AVATSIMIYEKIRQSFK

Sequences:

>Translated_257_residues
MLEIESKNNNLFKEIKKLKEKKHRIKSNKYLIEGLRFVEEAIKSKVSIDSIIFTESFKEKNPDLFLKINENIKLIQMNEA
LLKQLCSTENPQGIVGVINMQNKELKSGELVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSI
FYIPIVEDDSLDFVKSLKKEGYKLVVSSLQGKNNFFEENLQGKVMIAVGNEGNGVSDEVYDIADIKVKIPMPGEAESLNV
AVATSIMIYEKIRQSFK
>Mature_257_residues
MLEIESKNNNLFKEIKKLKEKKHRIKSNKYLIEGLRFVEEAIKSKVSIDSIIFTESFKEKNPDLFLKINENIKLIQMNEA
LLKQLCSTENPQGIVGVINMQNKELKSGELVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSI
FYIPIVEDDSLDFVKSLKKEGYKLVVSSLQGKNNFFEENLQGKVMIAVGNEGNGVSDEVYDIADIKVKIPMPGEAESLNV
AVATSIMIYEKIRQSFK

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=299, Percent_Identity=25.4180602006689, Blast_Score=87, Evalue=1e-17,
Organism=Escherichia coli, GI1790623, Length=146, Percent_Identity=27.3972602739726, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788935, Length=224, Percent_Identity=25, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790083, Length=171, Percent_Identity=27.4853801169591, Blast_Score=65, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24666840, Length=280, Percent_Identity=22.8571428571429, Blast_Score=87, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 28722; Mature: 28722

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEIESKNNNLFKEIKKLKEKKHRIKSNKYLIEGLRFVEEAIKSKVSIDSIIFTESFKEK
CEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHEEEEHHHCCC
NPDLFLKINENIKLIQMNEALLKQLCSTENPQGIVGVINMQNKELKSGELVVLVDKVQDP
CCCEEEEECCCEEEEEECHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCC
GNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDDSLDFVKSLKKE
CCCCHHEEECCCCCCCEEEEECCEEEEECCCHHHHCCCCEEEEEEECCCCHHHHHHHHHC
GYKLVVSSLQGKNNFFEENLQGKVMIAVGNEGNGVSDEVYDIADIKVKIPMPGEAESLNV
CCEEEHHHHCCCCCHHHCCCCCEEEEEECCCCCCCCCCCEEEEEEEEEECCCCCCCCEEE
AVATSIMIYEKIRQSFK
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLEIESKNNNLFKEIKKLKEKKHRIKSNKYLIEGLRFVEEAIKSKVSIDSIIFTESFKEK
CEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHEEEEHHHCCC
NPDLFLKINENIKLIQMNEALLKQLCSTENPQGIVGVINMQNKELKSGELVVLVDKVQDP
CCCEEEEECCCEEEEEECHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCC
GNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDDSLDFVKSLKKE
CCCCHHEEECCCCCCCEEEEECCEEEEECCCHHHHCCCCEEEEEEECCCCHHHHHHHHHC
GYKLVVSSLQGKNNFFEENLQGKVMIAVGNEGNGVSDEVYDIADIKVKIPMPGEAESLNV
CCEEEHHHHCCCCCHHHCCCCCEEEEEECCCCCCCCCCCEEEEEEEEEECCCCCCCCEEE
AVATSIMIYEKIRQSFK
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]