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The map label for this gene is ydcM [C]

Identifier: 18310869

GI number: 18310869

Start: 2169225

End: 2170379

Strand: Reverse

Name: ydcM [C]

Synonym: CPE1887

Alternate gene names: 18310869

Gene position: 2170379-2169225 (Counterclockwise)

Preceding gene: 18310870

Following gene: 18310868

Centisome position: 71.6

GC content: 30.04

Gene sequence:

>1155_bases
GTGATAAGAAAGAAAGCATATAAATTTAGAATATACCCAACTAAGAAACAAGCCGAGCTAATTAATAAGACTATTGGATG
TTGTAGGTTTGTATTCAACTATTCTTTAGGTATTCAAAAAACTAAAGATAATTATTGGAATATAGTTGAGGAGATGGTTC
AACAAGGCTACTTCCAAGAGAATAATTGGAAAGGCGAGTTCTTTAATAAAGCCAATTCAATTAAAGATATAGCTAAATTA
AAGAAAAGCTATGATTGGCTTAAAGAAGTAGATAGCATAGCACTACAGGCTTCTGTTGAAAATCTTGGTGCTGGATATGA
TAAGTATTACAAAAAAACAGGTGGTAGACCTAAATTTAAGTCTAAGAAAAATGAAATACAATCTTATACTACTAAATTAG
TAAAAGCTAAAGGTAATGTAAATATTGAGATAGTAGGTAAAAGAATTAAACTACCTAAACTTGGATTAGTTAAGATAGAA
AATTCAAGAAATGTAGATGGAAATATTAAAAGAGTTACTGTGAGCAGAACACAATCTGGTAAATATTTTGCATCTATTCT
TTGTGATGTAAATATTCAAGAATTACCTAAAATAGATAAAAAAGTTGGTGTAGATGTTGGATTAAAAACTTTTGCTGTTT
GTTCTGATGGATATGAAGAAGCTAATCCTAAACACTTTAGAAAGGCAGAAAAAAGACTTATTAAACTTCAAAGAGATTTA
GCTCGTAAAGAATATAACTCTAAAAACTATCACAAAAATAGAATTATGATTGCTAAATTACATGAAAGGATAGCAAATCA
AAGAATGGACTTCTTACAAAAATTTTCAACTAAGCTAATTAGAGAAAACCAATCAATAGCCATTGAAGATTTAAGAGTTT
CAAATATGCTTAAAAACCACAAACTTGCTAAAGTAATTTCAGAAGCAAGTTGGTCAGAATTTAGAAGAATGCTAGAATAC
AAGGCTGAATGGTATGGTAGAGAAATAGTAATTGCTCCACCAGACTATGCAAGCTCTCAACTATGTTCTGAATGTGGCTA
TAAGAATATAGAAGTTAAAAACCTAGGTCTAAGAGAATGGGTATGTCCCGAATGTGGAACACACCATCAAAGAGATCTTA
ATGCTTCAATAAACTTGGAAAAGCTGATAGCTTAA

Upstream 100 bases:

>100_bases
CTATGGAATCCAAGCTATTTTGTAGCTACTGTATCAGAGAATACAGAAGAACAAATTAGAAACTATATTCAAAATCAACA
AGTAAAGTGAGGTGAGATAA

Downstream 100 bases:

>100_bases
ACTATTGGTATCCAACGAGGTCGGAACGCCCTTGTTAGCTTGGTTAATCTCACACCTTTAGGTGTGTTGCCCAAGAATCT
TGGCATTTCAATGCCGAGTA

Product: transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MIRKKAYKFRIYPTKKQAELINKTIGCCRFVFNYSLGIQKTKDNYWNIVEEMVQQGYFQENNWKGEFFNKANSIKDIAKL
KKSYDWLKEVDSIALQASVENLGAGYDKYYKKTGGRPKFKSKKNEIQSYTTKLVKAKGNVNIEIVGKRIKLPKLGLVKIE
NSRNVDGNIKRVTVSRTQSGKYFASILCDVNIQELPKIDKKVGVDVGLKTFAVCSDGYEEANPKHFRKAEKRLIKLQRDL
ARKEYNSKNYHKNRIMIAKLHERIANQRMDFLQKFSTKLIRENQSIAIEDLRVSNMLKNHKLAKVISEASWSEFRRMLEY
KAEWYGREIVIAPPDYASSQLCSECGYKNIEVKNLGLREWVCPECGTHHQRDLNASINLEKLIA

Sequences:

>Translated_384_residues
MIRKKAYKFRIYPTKKQAELINKTIGCCRFVFNYSLGIQKTKDNYWNIVEEMVQQGYFQENNWKGEFFNKANSIKDIAKL
KKSYDWLKEVDSIALQASVENLGAGYDKYYKKTGGRPKFKSKKNEIQSYTTKLVKAKGNVNIEIVGKRIKLPKLGLVKIE
NSRNVDGNIKRVTVSRTQSGKYFASILCDVNIQELPKIDKKVGVDVGLKTFAVCSDGYEEANPKHFRKAEKRLIKLQRDL
ARKEYNSKNYHKNRIMIAKLHERIANQRMDFLQKFSTKLIRENQSIAIEDLRVSNMLKNHKLAKVISEASWSEFRRMLEY
KAEWYGREIVIAPPDYASSQLCSECGYKNIEVKNLGLREWVCPECGTHHQRDLNASINLEKLIA
>Mature_384_residues
MIRKKAYKFRIYPTKKQAELINKTIGCCRFVFNYSLGIQKTKDNYWNIVEEMVQQGYFQENNWKGEFFNKANSIKDIAKL
KKSYDWLKEVDSIALQASVENLGAGYDKYYKKTGGRPKFKSKKNEIQSYTTKLVKAKGNVNIEIVGKRIKLPKLGLVKIE
NSRNVDGNIKRVTVSRTQSGKYFASILCDVNIQELPKIDKKVGVDVGLKTFAVCSDGYEEANPKHFRKAEKRLIKLQRDL
ARKEYNSKNYHKNRIMIAKLHERIANQRMDFLQKFSTKLIRENQSIAIEDLRVSNMLKNHKLAKVISEASWSEFRRMLEY
KAEWYGREIVIAPPDYASSQLCSECGYKNIEVKNLGLREWVCPECGTHHQRDLNASINLEKLIA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=373, Percent_Identity=32.7077747989276, Blast_Score=165, Evalue=4e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44619; Mature: 44619

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRKKAYKFRIYPTKKQAELINKTIGCCRFVFNYSLGIQKTKDNYWNIVEEMVQQGYFQE
CCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHCCCCCC
NNWKGEFFNKANSIKDIAKLKKSYDWLKEVDSIALQASVENLGAGYDKYYKKTGGRPKFK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCC
SKKNEIQSYTTKLVKAKGNVNIEIVGKRIKLPKLGLVKIENSRNVDGNIKRVTVSRTQSG
HHHHHHHHHHHHHHHCCCCEEEEEEECEECCCCCCEEEECCCCCCCCCEEEEEEECCCCC
KYFASILCDVNIQELPKIDKKVGVDVGLKTFAVCSDGYEEANPKHFRKAEKRLIKLQRDL
CEEEHHHCCCCHHHHCCHHHHHCCCCCHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHH
ARKEYNSKNYHKNRIMIAKLHERIANQRMDFLQKFSTKLIRENQSIAIEDLRVSNMLKNH
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHH
KLAKVISEASWSEFRRMLEYKAEWYGREIVIAPPDYASSQLCSECGYKNIEVKNLGLREW
HHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEECCCCHHC
VCPECGTHHQRDLNASINLEKLIA
CCCCCCCCCCCCCCCCCCHHHHCC
>Mature Secondary Structure
MIRKKAYKFRIYPTKKQAELINKTIGCCRFVFNYSLGIQKTKDNYWNIVEEMVQQGYFQE
CCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHCCCCCC
NNWKGEFFNKANSIKDIAKLKKSYDWLKEVDSIALQASVENLGAGYDKYYKKTGGRPKFK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCC
SKKNEIQSYTTKLVKAKGNVNIEIVGKRIKLPKLGLVKIENSRNVDGNIKRVTVSRTQSG
HHHHHHHHHHHHHHHCCCCEEEEEEECEECCCCCCEEEECCCCCCCCCEEEEEEECCCCC
KYFASILCDVNIQELPKIDKKVGVDVGLKTFAVCSDGYEEANPKHFRKAEKRLIKLQRDL
CEEEHHHCCCCHHHHCCHHHHHCCCCCHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHH
ARKEYNSKNYHKNRIMIAKLHERIANQRMDFLQKFSTKLIRENQSIAIEDLRVSNMLKNH
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHH
KLAKVISEASWSEFRRMLEYKAEWYGREIVIAPPDYASSQLCSECGYKNIEVKNLGLREW
HHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEECCCCHHC
VCPECGTHHQRDLNASINLEKLIA
CCCCCCCCCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]