| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is spoVD [H]
Identifier: 18310845
GI number: 18310845
Start: 2132479
End: 2134698
Strand: Reverse
Name: spoVD [H]
Synonym: CPE1863
Alternate gene names: 18310845
Gene position: 2134698-2132479 (Counterclockwise)
Preceding gene: 18310846
Following gene: 18310844
Centisome position: 70.42
GC content: 32.3
Gene sequence:
>2220_bases GTGAAAAAGAAGAAAAACAAAGGATTTAAAGATTATAAAATAACAAAATCGCTTAGATTTGGAAGAACATATTGGACCAT GATAGTAGTATGGGGATTACTAGGAGTATTAACCTTAAGATTATCATACGTAATGATTTTTAAGCATAAAGAATATGGTT CAATGGCAGAAGAACAATGGAAAAATGAAATAAAGATAGGTGCTAAAAGAGGAGAAATACTAGATAGAAATGGAGCTCAA TTAGCTGTTAGCGCTAATGTTTATAGAGTGGATTTAGATCTTAAAACTTTAAGAGAAGATACATTTACTAAAGATGATAC AGATGATACAAAAAAAGAAAAGCTTAATAAAATTGCAGGGGAGCTAGGTACTGTTTTAGATATGCCTAAAGAAGAGGTAT ATGATAAGATAAATAGCACTTTACCATCAGGATTGCCAGCTACTTCTGTTACTTTAATTAGAAAGATAGAAAAAGATAAA GCTGATAGTGCTAAGAATTTAAAGATAAGAGGAGTAATAGTTTCACAGGATACAAAGAGATATTACCCAGATAATAATTT CTTAGCTCAAGTATTAGGAAGAGTTGATGCAGATGGTATAGGTCAAGGTGGTATAGAGCGTGAATATAATGTGGAGTTAT CAGGTTTACCAGGAATGAGAATATCAGAAGTTGCAAGAAATAGTAGTGGAATACCTTATTCAAATTCTGAATTTGCAAAG CCTGTGGATGGTAAAGATGTCACACTAACCGTTGATGAAACTATACAATATTTTGCAGAAAAAGTTGCAGAAGAAGGAAA AAAAGAATATAAAGCAGATGGGGTTAGTATAATAGTTATGAATCCTAAAAATGGAGAAATATTAGCTATGGCTAATAAAC CAGATTATAATCCTAATGAACCTTATAAAGGGTATGAAAATTTCCCTGGTAAAGATAAAACTGAAAAGATGGAAAATATG TGGAAAAATGATGCCGTATCAAATTCATTTGAGCCAGGATCTATATTTAAAATGGTAACATCTTCAGCTGCCGTACAAGA AGGGATAGCAGGTGGAAATGAAACATATTTTTGTCCAGGTGGAAAAAATGTATCTGGAACTTATATAAAATGTTGGAAGC CAGATGGGCATGGAACTGAAACTTTTGACCAAATATTAGAAAACTCTTGTAACGTTGGGTTTATGGACATAGGTCAAAAA CTTGGAAAAGAAAAATTAAATGAATATATAGAAAAGTTTGGATTTGGTAAGCAGACAGGAATAGATTTACCTGGAGAAAC AACAGGTATAGTATTGCCAAATGATAAAATAGGTCCAGTAGAACTTGCAACCATATCATTTGGTCAAACAGATAGTGCTA GTTCAGTTCAAATGATGGCAGCTATGAACACAATTGCTAATGGAGGAACATGGATACAACCTCATATAATGAAGGAAATA AGCCATGAAGATCCAAGTGGAGCAAGAGTAGTGGATAAAACTTTTGTACCTAAAAAGATTGATAATATAATAGATCAAAA AACAGCTATGAGAGTTTCAGAGGCTCTAGAAAAAACTGTTCATTTTGGATCTCCTAAGAGAGCTTATATAGAGGGATATG GAATTGCAGGTAAAACTGGTACAGCTGAAAAGGTTAAGGCTAGTGGAGGATATGGTGCAGGGTATGTAGCGTCCTTTGCT GGATTTGCTCCATATAATGATCCTCAAGTTTCAGTTTTAATATCTGTAGATAATCCAAAGGGGGAATACTTTGGAGGATT AGTAGCGGCACCATTAGCTCATGATTTATTTAGTGATATATTTAACTATATGGAATTAGATAGTTCAAAGATAGATAAAA ATAAATCAAAAGAAGAGATTCTGCCAGAAGTTAGAGGTATGAGTTTAGATAAGGCTAAAGCTATTTTAGATAAGGATAAT ATAAAATATTCTGTAGAAGATGGTGGCAATTCTGTAGTTGATATGAATCCTAAACCAGGATATACAATCAAAGAAGGAGA TGAAATTAAACTTTACACTAAAACTACTTCAAATTATAATAAAGATGTTATAGTACCAGATTTTAATGGACTTTCCATGG AAAAAGCAAAGGAAATTTTAAACAAAATTGGATTAAAAGGTACTTTTGCAGGAGAGGGAGTTATTAAGGAACAAAGTGTA GTTCAAGGTGATGTAGTTAAAAGTGGTACATCAATAGAATTTAAATTAGATAAGAAATAA
Upstream 100 bases:
>100_bases TAATTAGATAATATGATAAATTTAGTAGAACTTTAAAGTTTCATAAAGTGAATTTCAAAGAGGGAACTCAGTTTATTTAA CTTACTACGGAGGGCTAAGG
Downstream 100 bases:
>100_bases TGATAGTTAAAAACTAGCATGTGAGTAATTTCACATGCTAGTATTTTGTGAATTTAACGCTTGTTTATTGCATAGTATTT AAGGAGTGAGAAAAATGATT
Product: stage V sporulation protein D
Products: NA
Alternate protein names: Sporulation-specific penicillin-binding protein [H]
Number of amino acids: Translated: 739; Mature: 739
Protein sequence:
>739_residues MKKKKNKGFKDYKITKSLRFGRTYWTMIVVWGLLGVLTLRLSYVMIFKHKEYGSMAEEQWKNEIKIGAKRGEILDRNGAQ LAVSANVYRVDLDLKTLREDTFTKDDTDDTKKEKLNKIAGELGTVLDMPKEEVYDKINSTLPSGLPATSVTLIRKIEKDK ADSAKNLKIRGVIVSQDTKRYYPDNNFLAQVLGRVDADGIGQGGIEREYNVELSGLPGMRISEVARNSSGIPYSNSEFAK PVDGKDVTLTVDETIQYFAEKVAEEGKKEYKADGVSIIVMNPKNGEILAMANKPDYNPNEPYKGYENFPGKDKTEKMENM WKNDAVSNSFEPGSIFKMVTSSAAVQEGIAGGNETYFCPGGKNVSGTYIKCWKPDGHGTETFDQILENSCNVGFMDIGQK LGKEKLNEYIEKFGFGKQTGIDLPGETTGIVLPNDKIGPVELATISFGQTDSASSVQMMAAMNTIANGGTWIQPHIMKEI SHEDPSGARVVDKTFVPKKIDNIIDQKTAMRVSEALEKTVHFGSPKRAYIEGYGIAGKTGTAEKVKASGGYGAGYVASFA GFAPYNDPQVSVLISVDNPKGEYFGGLVAAPLAHDLFSDIFNYMELDSSKIDKNKSKEEILPEVRGMSLDKAKAILDKDN IKYSVEDGGNSVVDMNPKPGYTIKEGDEIKLYTKTTSNYNKDVIVPDFNGLSMEKAKEILNKIGLKGTFAGEGVIKEQSV VQGDVVKSGTSIEFKLDKK
Sequences:
>Translated_739_residues MKKKKNKGFKDYKITKSLRFGRTYWTMIVVWGLLGVLTLRLSYVMIFKHKEYGSMAEEQWKNEIKIGAKRGEILDRNGAQ LAVSANVYRVDLDLKTLREDTFTKDDTDDTKKEKLNKIAGELGTVLDMPKEEVYDKINSTLPSGLPATSVTLIRKIEKDK ADSAKNLKIRGVIVSQDTKRYYPDNNFLAQVLGRVDADGIGQGGIEREYNVELSGLPGMRISEVARNSSGIPYSNSEFAK PVDGKDVTLTVDETIQYFAEKVAEEGKKEYKADGVSIIVMNPKNGEILAMANKPDYNPNEPYKGYENFPGKDKTEKMENM WKNDAVSNSFEPGSIFKMVTSSAAVQEGIAGGNETYFCPGGKNVSGTYIKCWKPDGHGTETFDQILENSCNVGFMDIGQK LGKEKLNEYIEKFGFGKQTGIDLPGETTGIVLPNDKIGPVELATISFGQTDSASSVQMMAAMNTIANGGTWIQPHIMKEI SHEDPSGARVVDKTFVPKKIDNIIDQKTAMRVSEALEKTVHFGSPKRAYIEGYGIAGKTGTAEKVKASGGYGAGYVASFA GFAPYNDPQVSVLISVDNPKGEYFGGLVAAPLAHDLFSDIFNYMELDSSKIDKNKSKEEILPEVRGMSLDKAKAILDKDN IKYSVEDGGNSVVDMNPKPGYTIKEGDEIKLYTKTTSNYNKDVIVPDFNGLSMEKAKEILNKIGLKGTFAGEGVIKEQSV VQGDVVKSGTSIEFKLDKK >Mature_739_residues MKKKKNKGFKDYKITKSLRFGRTYWTMIVVWGLLGVLTLRLSYVMIFKHKEYGSMAEEQWKNEIKIGAKRGEILDRNGAQ LAVSANVYRVDLDLKTLREDTFTKDDTDDTKKEKLNKIAGELGTVLDMPKEEVYDKINSTLPSGLPATSVTLIRKIEKDK ADSAKNLKIRGVIVSQDTKRYYPDNNFLAQVLGRVDADGIGQGGIEREYNVELSGLPGMRISEVARNSSGIPYSNSEFAK PVDGKDVTLTVDETIQYFAEKVAEEGKKEYKADGVSIIVMNPKNGEILAMANKPDYNPNEPYKGYENFPGKDKTEKMENM WKNDAVSNSFEPGSIFKMVTSSAAVQEGIAGGNETYFCPGGKNVSGTYIKCWKPDGHGTETFDQILENSCNVGFMDIGQK LGKEKLNEYIEKFGFGKQTGIDLPGETTGIVLPNDKIGPVELATISFGQTDSASSVQMMAAMNTIANGGTWIQPHIMKEI SHEDPSGARVVDKTFVPKKIDNIIDQKTAMRVSEALEKTVHFGSPKRAYIEGYGIAGKTGTAEKVKASGGYGAGYVASFA GFAPYNDPQVSVLISVDNPKGEYFGGLVAAPLAHDLFSDIFNYMELDSSKIDKNKSKEEILPEVRGMSLDKAKAILDKDN IKYSVEDGGNSVVDMNPKPGYTIKEGDEIKLYTKTTSNYNKDVIVPDFNGLSMEKAKEILNKIGLKGTFAGEGVIKEQSV VQGDVVKSGTSIEFKLDKK
Specific function: Penicillin-binding protein with an unknown catalytic activity. May have a specialized role in the morphogenesis of spore cortex, which is a modified form of peptidoglycan. Pore cortex formation is determined primarily by the mother cell [H]
COG id: COG0768
COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PASTA domain [H]
Homologues:
Organism=Escherichia coli, GI1786272, Length=604, Percent_Identity=27.4834437086093, Blast_Score=192, Evalue=7e-50, Organism=Escherichia coli, GI1786854, Length=665, Percent_Identity=25.4135338345865, Blast_Score=154, Evalue=2e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR005543 - InterPro: IPR005311 - InterPro: IPR001460 - InterPro: IPR011927 [H]
Pfam domain/function: PF03793 PASTA; PF03717 PBP_dimer; PF00905 Transpeptidase [H]
EC number: NA
Molecular weight: Translated: 81277; Mature: 81277
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKKNKGFKDYKITKSLRFGRTYWTMIVVWGLLGVLTLRLSYVMIFKHKEYGSMAEEQW CCCCCCCCCCCEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHH KNEIKIGAKRGEILDRNGAQLAVSANVYRVDLDLKTLREDTFTKDDTDDTKKEKLNKIAG HHHEEECCCCCCEECCCCCEEEEEEEEEEEECCHHHHHHHCCCCCCCCHHHHHHHHHHHH ELGTVLDMPKEEVYDKINSTLPSGLPATSVTLIRKIEKDKADSAKNLKIRGVIVSQDTKR HHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCC YYPDNNFLAQVLGRVDADGIGQGGIEREYNVELSGLPGMRISEVARNSSGIPYSNSEFAK CCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCC PVDGKDVTLTVDETIQYFAEKVAEEGKKEYKADGVSIIVMNPKNGEILAMANKPDYNPNE CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCCCCC PYKGYENFPGKDKTEKMENMWKNDAVSNSFEPGSIFKMVTSSAAVQEGIAGGNETYFCPG CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCC GKNVSGTYIKCWKPDGHGTETFDQILENSCNVGFMDIGQKLGKEKLNEYIEKFGFGKQTG CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC IDLPGETTGIVLPNDKIGPVELATISFGQTDSASSVQMMAAMNTIANGGTWIQPHIMKEI CCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEECHHHHHHH SHEDPSGARVVDKTFVPKKIDNIIDQKTAMRVSEALEKTVHFGSPKRAYIEGYGIAGKTG CCCCCCCCEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC TAEKVKASGGYGAGYVASFAGFAPYNDPQVSVLISVDNPKGEYFGGLVAAPLAHDLFSDI CHHHEECCCCCCCHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHCCHHHHHHHHHHHHHH FNYMELDSSKIDKNKSKEEILPEVRGMSLDKAKAILDKDNIKYSVEDGGNSVVDMNPKPG HHHHHCCCHHHCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECCCCEEEECCCCCC YTIKEGDEIKLYTKTTSNYNKDVIVPDFNGLSMEKAKEILNKIGLKGTFAGEGVIKEQSV CEECCCCEEEEEEEECCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHH VQGDVVKSGTSIEFKLDKK HHCHHCCCCCEEEEEECCC >Mature Secondary Structure MKKKKNKGFKDYKITKSLRFGRTYWTMIVVWGLLGVLTLRLSYVMIFKHKEYGSMAEEQW CCCCCCCCCCCEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHH KNEIKIGAKRGEILDRNGAQLAVSANVYRVDLDLKTLREDTFTKDDTDDTKKEKLNKIAG HHHEEECCCCCCEECCCCCEEEEEEEEEEEECCHHHHHHHCCCCCCCCHHHHHHHHHHHH ELGTVLDMPKEEVYDKINSTLPSGLPATSVTLIRKIEKDKADSAKNLKIRGVIVSQDTKR HHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCC YYPDNNFLAQVLGRVDADGIGQGGIEREYNVELSGLPGMRISEVARNSSGIPYSNSEFAK CCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCC PVDGKDVTLTVDETIQYFAEKVAEEGKKEYKADGVSIIVMNPKNGEILAMANKPDYNPNE CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCCCCC PYKGYENFPGKDKTEKMENMWKNDAVSNSFEPGSIFKMVTSSAAVQEGIAGGNETYFCPG CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCC GKNVSGTYIKCWKPDGHGTETFDQILENSCNVGFMDIGQKLGKEKLNEYIEKFGFGKQTG CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC IDLPGETTGIVLPNDKIGPVELATISFGQTDSASSVQMMAAMNTIANGGTWIQPHIMKEI CCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEECHHHHHHH SHEDPSGARVVDKTFVPKKIDNIIDQKTAMRVSEALEKTVHFGSPKRAYIEGYGIAGKTG CCCCCCCCEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC TAEKVKASGGYGAGYVASFAGFAPYNDPQVSVLISVDNPKGEYFGGLVAAPLAHDLFSDI CHHHEECCCCCCCHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHCCHHHHHHHHHHHHHH FNYMELDSSKIDKNKSKEEILPEVRGMSLDKAKAILDKDNIKYSVEDGGNSVVDMNPKPG HHHHHCCCHHHCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECCCCEEEECCCCCC YTIKEGDEIKLYTKTTSNYNKDVIVPDFNGLSMEKAKEILNKIGLKGTFAGEGVIKEQSV CEECCCCEEEEEEEECCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHH VQGDVVKSGTSIEFKLDKK HHCHHCCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8289242; 9384377; 8244929; 8436954 [H]