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The map label for this gene is yggS [C]

Identifier: 18310836

GI number: 18310836

Start: 2123895

End: 2124554

Strand: Reverse

Name: yggS [C]

Synonym: CPE1854

Alternate gene names: 18310836

Gene position: 2124554-2123895 (Counterclockwise)

Preceding gene: 18310837

Following gene: 18310835

Centisome position: 70.08

GC content: 27.27

Gene sequence:

>660_bases
GTGGATATAAAAGAAAATTTAACAAAATTTACAGAAAAAATTCCAAGTAACGTTCAACTTATTGCTGTATCTAAAACAAG
AACTATTGAAGAAATGGAAGAGGCCTATGAATTTGGTATTAGAAAATTTGGTGAAAATAAGGTTCAAGAAATAATAAGAA
AATTTGATGAGTTTCACCAAGATGTAGAATGGCATTTAATAGGACATCTTCAAACTAATAAGGTGAAGTATATAGTTGAT
AAAGTTCATCTTATACAATCATTAGATAGTATTAAATTATTAAAAGAAATAGAAAAGGTATATGGTAAACATAATAAAAT
TGCCAATACTTTAATTCAAGTTAACATAGGAAGAGAAGAACAAAAGTATGGTATCTTGGAAGAAGAGTTAGATGAACTTA
TAGAAGCTATAGAAGCTTGTAACAATGTTAATGTTTTAGGTATTATGACTATAATTCCAAAGGGAACAGAAGAAGAATGT
AGAAAGTATTTCAGTAAAACTCATAAGCTTTTTTGTGAATTAAAAGAGAAAAAGTTTAAGAATATAAAAATGGATATACT
TTCAATGGGAATGTCAGGTGATTATGAGATTGCTACTGAAGAAGGCAGCAATATGGTTAGAATTGGCCAAGGAATTTTTG
GCAAAAGATTATATAAATAA

Upstream 100 bases:

>100_bases
AAAGAACTATGTTTTGTAAAAAATTTGTACAAAAAAGAAGGATTTTCTATTCCTATAAAGAAGAATATAATGTAATATAT
AATTAAAGGAGACAGTAAAA

Downstream 100 bases:

>100_bases
AATTAGGAGGATATGTGTATGTCAAAAGTAGTTAGTAAAATGAAAAGTTTTTTAGGGTTTGATGAATTCGAAGATGAAGA
TGAAGTAATGGAAGAAGAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MDIKENLTKFTEKIPSNVQLIAVSKTRTIEEMEEAYEFGIRKFGENKVQEIIRKFDEFHQDVEWHLIGHLQTNKVKYIVD
KVHLIQSLDSIKLLKEIEKVYGKHNKIANTLIQVNIGREEQKYGILEEELDELIEAIEACNNVNVLGIMTIIPKGTEEEC
RKYFSKTHKLFCELKEKKFKNIKMDILSMGMSGDYEIATEEGSNMVRIGQGIFGKRLYK

Sequences:

>Translated_219_residues
MDIKENLTKFTEKIPSNVQLIAVSKTRTIEEMEEAYEFGIRKFGENKVQEIIRKFDEFHQDVEWHLIGHLQTNKVKYIVD
KVHLIQSLDSIKLLKEIEKVYGKHNKIANTLIQVNIGREEQKYGILEEELDELIEAIEACNNVNVLGIMTIIPKGTEEEC
RKYFSKTHKLFCELKEKKFKNIKMDILSMGMSGDYEIATEEGSNMVRIGQGIFGKRLYK
>Mature_219_residues
MDIKENLTKFTEKIPSNVQLIAVSKTRTIEEMEEAYEFGIRKFGENKVQEIIRKFDEFHQDVEWHLIGHLQTNKVKYIVD
KVHLIQSLDSIKLLKEIEKVYGKHNKIANTLIQVNIGREEQKYGILEEELDELIEAIEACNNVNVLGIMTIIPKGTEEEC
RKYFSKTHKLFCELKEKKFKNIKMDILSMGMSGDYEIATEEGSNMVRIGQGIFGKRLYK

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=232, Percent_Identity=33.6206896551724, Blast_Score=117, Evalue=5e-27,
Organism=Escherichia coli, GI1789321, Length=232, Percent_Identity=34.4827586206897, Blast_Score=134, Evalue=7e-33,
Organism=Caenorhabditis elegans, GI17533025, Length=217, Percent_Identity=33.1797235023041, Blast_Score=97, Evalue=8e-21,
Organism=Saccharomyces cerevisiae, GI6319435, Length=216, Percent_Identity=36.1111111111111, Blast_Score=109, Evalue=4e-25,
Organism=Drosophila melanogaster, GI45550861, Length=247, Percent_Identity=35.2226720647773, Blast_Score=123, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25518; Mature: 25518

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIKENLTKFTEKIPSNVQLIAVSKTRTIEEMEEAYEFGIRKFGENKVQEIIRKFDEFHQ
CCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHC
DVEWHLIGHLQTNKVKYIVDKVHLIQSLDSIKLLKEIEKVYGKHNKIANTLIQVNIGREE
CCCEEEEECEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEEEECCCCH
QKYGILEEELDELIEAIEACNNVNVLGIMTIIPKGTEEECRKYFSKTHKLFCELKEKKFK
HHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
NIKMDILSMGMSGDYEIATEEGSNMVRIGQGIFGKRLYK
HHHHHHHHCCCCCCEEEEECCCCCEEEECCCHHHHHCCC
>Mature Secondary Structure
MDIKENLTKFTEKIPSNVQLIAVSKTRTIEEMEEAYEFGIRKFGENKVQEIIRKFDEFHQ
CCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHC
DVEWHLIGHLQTNKVKYIVDKVHLIQSLDSIKLLKEIEKVYGKHNKIANTLIQVNIGREE
CCCEEEEECEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEEEECCCCH
QKYGILEEELDELIEAIEACNNVNVLGIMTIIPKGTEEECRKYFSKTHKLFCELKEKKFK
HHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
NIKMDILSMGMSGDYEIATEEGSNMVRIGQGIFGKRLYK
HHHHHHHHCCCCCCEEEEECCCCCEEEECCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]