Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

Click here to switch to the map view.

The map label for this gene is 18310827

Identifier: 18310827

GI number: 18310827

Start: 2115485

End: 2116516

Strand: Reverse

Name: 18310827

Synonym: CPE1845

Alternate gene names: NA

Gene position: 2116516-2115485 (Counterclockwise)

Preceding gene: 18310828

Following gene: 18310826

Centisome position: 69.82

GC content: 27.62

Gene sequence:

>1032_bases
ATGAGGAAAGCTGCTGCTTTAAGTTTATTAGTATTAGTTATTTTATCAACAACCCTTGCGGGATGTAATTTCGGTAAAGG
GTCTAATGAAGAAGACAGTAAGGGAACAAACTTAAAACTTCCTTGTAGTATTGTGTCTACAATTTCAGGGGAAGATGTTT
TGTATTACGAAATAGAAGGGGATTCACTAAAAAAACTTGATTTAGATCTTAAGGGGCATATGGAAGTTTATAGTGAGGAA
TTAGGTTTAGCTGTTTATAGGGAATTTGCTGATAAGGGAACAAACTTAATAATAACTAATGGAGTTAAGGAACATAAGAT
ATCAGTAGAGGGAAATATAGAAGAATTAATTATTAGTCCAAAGGGAACTAAACTTCTATATAGATATAATTCTGGGGATA
AAATAGGATACAAGGTTTTAGACTTACAAAATTTTAAGGAATTTGATTTTAATGAGAATTTAGCTATTTCAGGGGAAAAT
GTTAAATTTGTTAATGAGGATCAATTAATTCTATATGGTGTTGACCTAGAAAAAAGACAAAGTGGGCTATATATTTATAA
TATTAAAGATGGAAGCTATACTTTAGAAAAGCAAATAGTTAAGGCTTTTATAGATTATATTGATTTAGTTGAAGATCAAG
TTGTTTTATATACTCAAAGCAGTATTGATGGCAAGAAAAATTGCTATATATATAATTTGGATAGTAAAAAAGAATCTGTT
ATTTCAAATGAGGTTGGAGAAATAGAATCTTTATGTAAAATAGGAAATGTAGTGTATTTTATTGGTACAAAGGGCGAAGG
GTTAAGAAGCTTGTATTCAATTGATATAACAAATAATAAACTTGATAGATTAGTGTATGATTTTCCTAAAAATATATCAG
AGAAATCAAAGTTAATTGTTGTTGGAGATAATATATATTTTCTTGGATTTAATGATAGTAAAGAAAAAAATGCACTATAT
AGATATAATCTAAAGGATAAGAGTATTAAACTTATAGATAGCAATAAAGGGCAGTATATTATTATAAAATAG

Upstream 100 bases:

>100_bases
GAATTAAAAGTTAATATTGAAGATGATGGAGTAAAAATGATAGGTAATGCGTCATTTATTTGTGATGGCACATATTTATT
TTAGAGAGGGAAGTAAGTAA

Downstream 100 bases:

>100_bases
TTAAAAGTTCTAGATTATTAAAAATTTTTAATAATCTAGAATTTTTTTTGTTTAAAAAAGAAATGCCTTGTCAATTATTA
CTGATGAGGAGGTTGATATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MRKAAALSLLVLVILSTTLAGCNFGKGSNEEDSKGTNLKLPCSIVSTISGEDVLYYEIEGDSLKKLDLDLKGHMEVYSEE
LGLAVYREFADKGTNLIITNGVKEHKISVEGNIEELIISPKGTKLLYRYNSGDKIGYKVLDLQNFKEFDFNENLAISGEN
VKFVNEDQLILYGVDLEKRQSGLYIYNIKDGSYTLEKQIVKAFIDYIDLVEDQVVLYTQSSIDGKKNCYIYNLDSKKESV
ISNEVGEIESLCKIGNVVYFIGTKGEGLRSLYSIDITNNKLDRLVYDFPKNISEKSKLIVVGDNIYFLGFNDSKEKNALY
RYNLKDKSIKLIDSNKGQYIIIK

Sequences:

>Translated_343_residues
MRKAAALSLLVLVILSTTLAGCNFGKGSNEEDSKGTNLKLPCSIVSTISGEDVLYYEIEGDSLKKLDLDLKGHMEVYSEE
LGLAVYREFADKGTNLIITNGVKEHKISVEGNIEELIISPKGTKLLYRYNSGDKIGYKVLDLQNFKEFDFNENLAISGEN
VKFVNEDQLILYGVDLEKRQSGLYIYNIKDGSYTLEKQIVKAFIDYIDLVEDQVVLYTQSSIDGKKNCYIYNLDSKKESV
ISNEVGEIESLCKIGNVVYFIGTKGEGLRSLYSIDITNNKLDRLVYDFPKNISEKSKLIVVGDNIYFLGFNDSKEKNALY
RYNLKDKSIKLIDSNKGQYIIIK
>Mature_343_residues
MRKAAALSLLVLVILSTTLAGCNFGKGSNEEDSKGTNLKLPCSIVSTISGEDVLYYEIEGDSLKKLDLDLKGHMEVYSEE
LGLAVYREFADKGTNLIITNGVKEHKISVEGNIEELIISPKGTKLLYRYNSGDKIGYKVLDLQNFKEFDFNENLAISGEN
VKFVNEDQLILYGVDLEKRQSGLYIYNIKDGSYTLEKQIVKAFIDYIDLVEDQVVLYTQSSIDGKKNCYIYNLDSKKESV
ISNEVGEIESLCKIGNVVYFIGTKGEGLRSLYSIDITNNKLDRLVYDFPKNISEKSKLIVVGDNIYFLGFNDSKEKNALY
RYNLKDKSIKLIDSNKGQYIIIK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38686; Mature: 38686

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKAAALSLLVLVILSTTLAGCNFGKGSNEEDSKGTNLKLPCSIVSTISGEDVLYYEIEG
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECHHHEECCCCCEEEEEEECC
DSLKKLDLDLKGHMEVYSEELGLAVYREFADKGTNLIITNGVKEHKISVEGNIEELIISP
CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCCCEEEEECC
KGTKLLYRYNSGDKIGYKVLDLQNFKEFDFNENLAISGENVKFVNEDQLILYGVDLEKRQ
CCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCEEEECCCEEEECCCCEEEEECCHHHCC
SGLYIYNIKDGSYTLEKQIVKAFIDYIDLVEDQVVLYTQSSIDGKKNCYIYNLDSKKESV
CCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCEEEEECCCCHHHH
ISNEVGEIESLCKIGNVVYFIGTKGEGLRSLYSIDITNNKLDRLVYDFPKNISEKSKLIV
HHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEEEECCCHHHHHHHHCCCCCCCCCEEEE
VGDNIYFLGFNDSKEKNALYRYNLKDKSIKLIDSNKGQYIIIK
EECCEEEEEECCCCCCCCEEEEECCCCEEEEEECCCCCEEEEC
>Mature Secondary Structure
MRKAAALSLLVLVILSTTLAGCNFGKGSNEEDSKGTNLKLPCSIVSTISGEDVLYYEIEG
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECHHHEECCCCCEEEEEEECC
DSLKKLDLDLKGHMEVYSEELGLAVYREFADKGTNLIITNGVKEHKISVEGNIEELIISP
CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCCCEEEEECC
KGTKLLYRYNSGDKIGYKVLDLQNFKEFDFNENLAISGENVKFVNEDQLILYGVDLEKRQ
CCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCEEEECCCEEEECCCCEEEEECCHHHCC
SGLYIYNIKDGSYTLEKQIVKAFIDYIDLVEDQVVLYTQSSIDGKKNCYIYNLDSKKESV
CCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCEEEEECCCCHHHH
ISNEVGEIESLCKIGNVVYFIGTKGEGLRSLYSIDITNNKLDRLVYDFPKNISEKSKLIV
HHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEEEECCCHHHHHHHHCCCCCCCCCEEEE
VGDNIYFLGFNDSKEKNALYRYNLKDKSIKLIDSNKGQYIIIK
EECCEEEEEECCCCCCCCEEEEECCCCEEEEEECCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA