Click here to switch to the map view.

The map label for this gene is pilC [H]

Identifier: 18310825

GI number: 18310825

Start: 2112991

End: 2114010

Strand: Reverse

Name: pilC [H]

Synonym: CPE1843

Alternate gene names: 18310825

Gene position: 2114010-2112991 (Counterclockwise)

Preceding gene: 18310826

Following gene: 18310824

Centisome position: 69.74

GC content: 26.96

Gene sequence:

>1020_bases
ATGTTTGGGTTTAAAGATGAAGCTTCATACATATGCTTAAATTTAAGCACATATGTAAAATCAGGAATGTCTATAGGACG
ATCATTAGACTTAATAAAGAACACTGTAAAAGATAAGAAATACAAAGAATCCCTAAAGAGAATTGAGAGAAAGGTTTTAA
ATGGAGAGGCTTTATCAAAGGCTTTTAAGGAGGAAGGTAACTTATATCCAGATTTAATGAAGGATATGATGAGGATTGGA
GAAGAAAGTGGAAACTTAGAAGAGGTTCTAGAAAAGTGTGCTAGAAATATATTAGCTGAAAAGGAAATAAAGAATAAAAT
TATTAAATCTCTTAGATATCCAGTTTCACTTCTTATAGGTTTAATTATTATGATTTTTGGTTATGTAACTTATATTTTGC
CACAGTTTGTAGATATGTATGAGTTAAGGGAAATTGAAGGTTCTAAAATTATGACTTTATTAAATAATTATATTAACTTT
GTAGAAGAAAATCCTAATGTTGAAGTAATAGTTTTTTGTTATTTTTCCTGTGCCTTAATTTCGCTTTATCTATTATTTAA
AGTAATACCCTCTGAAAAAATCTTAGAAAAGATAGAAGTATACAGAATGTATTATGAAATTAGAATATTATTTTTAATAA
ACATGATATTAAATAGTGGAATATCCCTAAATAATTCTTTAAGTGTATTTGGAGAAAGCTTAAGTGATGTAAAGCTTAGA
AAATATATTAAGAGCATAAATGAAGAATTAATAAAAGGGACTACTTTAAGCAGTAGTATAGGGAAAATAAATGTTATTTC
TCATGTATCAAAGGGATTTTTAATAACAGGAGAAGAAAGTGGATTGTTTAGTAAAAATATTGAAGAGCTTTTAAAAATAA
GAGAAAAAGATTTTGATAGGGCACTAAATAAAACTGTTGGGAAAATAGAGCCAGCAATGTTTATTATATTAGGTTTTGTT
ATTTCAGCTATGATGCTTTTAGTTTTAGTACCTACCTTTGAGGGCATGAAATATGTATAG

Upstream 100 bases:

>100_bases
ACTTGGGGAGAAGAACTATTAAAGGCATGTTTTACCTTAGTTAAAAAGGGAGAAATATCTTTACAAGAATATTATTTATT
AAAAGAATGTGAGGGGTTAG

Downstream 100 bases:

>100_bases
TAAAAGAAAAGGATTTACCCTTAGCGAAGTAATAATATACCTGGCAATAACTTCTCTTATTTTAGCAATACCAACATCAT
TTATGATTATAAAAGATAGG

Product: fimbrial assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MFGFKDEASYICLNLSTYVKSGMSIGRSLDLIKNTVKDKKYKESLKRIERKVLNGEALSKAFKEEGNLYPDLMKDMMRIG
EESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPVSLLIGLIIMIFGYVTYILPQFVDMYELREIEGSKIMTLLNNYINF
VEENPNVEVIVFCYFSCALISLYLLFKVIPSEKILEKIEVYRMYYEIRILFLINMILNSGISLNNSLSVFGESLSDVKLR
KYIKSINEELIKGTTLSSSIGKINVISHVSKGFLITGEESGLFSKNIEELLKIREKDFDRALNKTVGKIEPAMFIILGFV
ISAMMLLVLVPTFEGMKYV

Sequences:

>Translated_339_residues
MFGFKDEASYICLNLSTYVKSGMSIGRSLDLIKNTVKDKKYKESLKRIERKVLNGEALSKAFKEEGNLYPDLMKDMMRIG
EESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPVSLLIGLIIMIFGYVTYILPQFVDMYELREIEGSKIMTLLNNYINF
VEENPNVEVIVFCYFSCALISLYLLFKVIPSEKILEKIEVYRMYYEIRILFLINMILNSGISLNNSLSVFGESLSDVKLR
KYIKSINEELIKGTTLSSSIGKINVISHVSKGFLITGEESGLFSKNIEELLKIREKDFDRALNKTVGKIEPAMFIILGFV
ISAMMLLVLVPTFEGMKYV
>Mature_339_residues
MFGFKDEASYICLNLSTYVKSGMSIGRSLDLIKNTVKDKKYKESLKRIERKVLNGEALSKAFKEEGNLYPDLMKDMMRIG
EESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPVSLLIGLIIMIFGYVTYILPQFVDMYELREIEGSKIMTLLNNYINF
VEENPNVEVIVFCYFSCALISLYLLFKVIPSEKILEKIEVYRMYYEIRILFLINMILNSGISLNNSLSVFGESLSDVKLR
KYIKSINEELIKGTTLSSSIGKINVISHVSKGFLITGEESGLFSKNIEELLKIREKDFDRALNKTVGKIEPAMFIILGFV
ISAMMLLVLVPTFEGMKYV

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1786295, Length=136, Percent_Identity=26.4705882352941, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 38798; Mature: 38798

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGFKDEASYICLNLSTYVKSGMSIGRSLDLIKNTVKDKKYKESLKRIERKVLNGEALSK
CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
AFKEEGNLYPDLMKDMMRIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPVSLLIG
HHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIIMIFGYVTYILPQFVDMYELREIEGSKIMTLLNNYINFVEENPNVEVIVFCYFSCALI
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHH
SLYLLFKVIPSEKILEKIEVYRMYYEIRILFLINMILNSGISLNNSLSVFGESLSDVKLR
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHH
KYIKSINEELIKGTTLSSSIGKINVISHVSKGFLITGEESGLFSKNIEELLKIREKDFDR
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH
ALNKTVGKIEPAMFIILGFVISAMMLLVLVPTFEGMKYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MFGFKDEASYICLNLSTYVKSGMSIGRSLDLIKNTVKDKKYKESLKRIERKVLNGEALSK
CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
AFKEEGNLYPDLMKDMMRIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPVSLLIG
HHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIIMIFGYVTYILPQFVDMYELREIEGSKIMTLLNNYINFVEENPNVEVIVFCYFSCALI
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHH
SLYLLFKVIPSEKILEKIEVYRMYYEIRILFLINMILNSGISLNNSLSVFGESLSDVKLR
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHH
KYIKSINEELIKGTTLSSSIGKINVISHVSKGFLITGEESGLFSKNIEELLKIREKDFDR
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH
ALNKTVGKIEPAMFIILGFVISAMMLLVLVPTFEGMKYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1944223; 12024217 [H]