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The map label for this gene is yqgF [C]

Identifier: 18310760

GI number: 18310760

Start: 2056794

End: 2057207

Strand: Reverse

Name: yqgF [C]

Synonym: CPE1778

Alternate gene names: 18310760

Gene position: 2057207-2056794 (Counterclockwise)

Preceding gene: 18310761

Following gene: 18310759

Centisome position: 67.86

GC content: 33.57

Gene sequence:

>414_bases
ATGAGAATTTTAGGTTTAGATATCGGAAGTAAAACTATAGGAGTTGCAGTAAGTGATCCACTTGGATGGACAGCTCAAGG
TGTAACAACTATAAAAAGAGATTGCTACACTAAAGACGTAGAGGCAGTCATGAAAATATGCAAAGAGTATGGAGTAGAAA
CTATAGTTGCAGGTATGCCAAAAAATATGAATGGAACAATAGGGCCATCTGGAGAAATGGTTAAAAATTTATGTGAACAA
ATTGAAAAATCATTTGATGGTAAAATAGAGTTTTGGGATGAAAGACTTACAACAGTTGCTGCTCATAGAGCAATGCTAGA
AGCGGATTTATCAAGAGCGAAAAGAAAAAAAATAGTCGATAAAATAGCGGCTACTTATATATTACAAGGATACTTAGACA
GAATATCAAAATAA

Upstream 100 bases:

>100_bases
AAAGAGATGAAATACTTGAAGAAGTTATAAAATCTTATCTAGAGATAAAATAACAAAGAGTGCCCGAAAGGGTACTCTTT
CGTTTATGTAAGGAGATTCA

Downstream 100 bases:

>100_bases
AAAGGAGAAGTTAAAATGAATAACGATTTACAACCAATAGTTTTAGTTGATGAAGAAGGAATAGAAACAACATTCAACGT
AGTAACTAAATTAGATATCG

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MRILGLDIGSKTIGVAVSDPLGWTAQGVTTIKRDCYTKDVEAVMKICKEYGVETIVAGMPKNMNGTIGPSGEMVKNLCEQ
IEKSFDGKIEFWDERLTTVAAHRAMLEADLSRAKRKKIVDKIAATYILQGYLDRISK

Sequences:

>Translated_137_residues
MRILGLDIGSKTIGVAVSDPLGWTAQGVTTIKRDCYTKDVEAVMKICKEYGVETIVAGMPKNMNGTIGPSGEMVKNLCEQ
IEKSFDGKIEFWDERLTTVAAHRAMLEADLSRAKRKKIVDKIAATYILQGYLDRISK
>Mature_137_residues
MRILGLDIGSKTIGVAVSDPLGWTAQGVTTIKRDCYTKDVEAVMKICKEYGVETIVAGMPKNMNGTIGPSGEMVKNLCEQ
IEKSFDGKIEFWDERLTTVAAHRAMLEADLSRAKRKKIVDKIAATYILQGYLDRISK

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=132, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_CLOP1 (Q0TPH6)

Other databases:

- EMBL:   CP000246
- RefSeq:   YP_696464.1
- ProteinModelPortal:   Q0TPH6
- SMR:   Q0TPH6
- STRING:   Q0TPH6
- GeneID:   4202810
- GenomeReviews:   CP000246_GR
- KEGG:   cpf:CPF_2031
- TIGR:   CPF_2031
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- ProtClustDB:   PRK00109
- BioCyc:   CPER195103:CPF_2031-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15156; Mature: 15156

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILGLDIGSKTIGVAVSDPLGWTAQGVTTIKRDCYTKDVEAVMKICKEYGVETIVAGMP
CEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCC
KNMNGTIGPSGEMVKNLCEQIEKSFDGKIEFWDERLTTVAAHRAMLEADLSRAKRKKIVD
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIAATYILQGYLDRISK
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRILGLDIGSKTIGVAVSDPLGWTAQGVTTIKRDCYTKDVEAVMKICKEYGVETIVAGMP
CEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCC
KNMNGTIGPSGEMVKNLCEQIEKSFDGKIEFWDERLTTVAAHRAMLEADLSRAKRKKIVD
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIAATYILQGYLDRISK
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA