| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310731
Identifier: 18310731
GI number: 18310731
Start: 2025914
End: 2026183
Strand: Reverse
Name: 18310731
Synonym: CPE1749
Alternate gene names: NA
Gene position: 2026183-2025914 (Counterclockwise)
Preceding gene: 18310732
Following gene: 18310730
Centisome position: 66.84
GC content: 33.33
Gene sequence:
>270_bases ATGAGTATAAAGTTAATTAATATTGGTTTTGGAAACATAGTTTCAGCTAATAGATTAGTAGCAATAGTAAGTCCTGAATC AGCACCTATAAAGAGAATCATACAAGAAGCTAGAGATAGAGGTATGCTTATAGATGCAACTTATGGTAGAAGAACAAGAG CCGTAATAATTACAGATTCAGATCATGTAATTCTTTCAGCTGTTCAACCTGAGACAGTGGCTCACAGATTATCAACTAAG GAAGAAGTAGTTGTTGAAGATGATGAATAA
Upstream 100 bases:
>100_bases TCAACAGATTTAGAAATAACCAACAAGGTTATAGATATAAAAAATATTATTGAAAAGATTAGAGAACAAGTTCAAAACAT AGAATAATAGGAGGTAGCAA
Downstream 100 bases:
>100_bases GATACATAAGGATAATAGAGGTGTATTAATAGTTATTTCTGGTCCTTCAGGTGCAGGTAAGGGAACTATTTGTAAAGCCT TATTAGAAAAACACGATGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 89; Mature: 88
Protein sequence:
>89_residues MSIKLINIGFGNIVSANRLVAIVSPESAPIKRIIQEARDRGMLIDATYGRRTRAVIITDSDHVILSAVQPETVAHRLSTK EEVVVEDDE
Sequences:
>Translated_89_residues MSIKLINIGFGNIVSANRLVAIVSPESAPIKRIIQEARDRGMLIDATYGRRTRAVIITDSDHVILSAVQPETVAHRLSTK EEVVVEDDE >Mature_88_residues SIKLINIGFGNIVSANRLVAIVSPESAPIKRIIQEARDRGMLIDATYGRRTRAVIITDSDHVILSAVQPETVAHRLSTKE EVVVEDDE
Specific function: Unknown
COG id: COG2052
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0296 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007169 - ProDom: PD063023 [H]
Pfam domain/function: PF04025 DUF370 [H]
EC number: NA
Molecular weight: Translated: 9810; Mature: 9679
Theoretical pI: Translated: 5.69; Mature: 5.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIKLINIGFGNIVSANRLVAIVSPESAPIKRIIQEARDRGMLIDATYGRRTRAVIITDS CEEEEEEECCCCEECCCEEEEEECCCCCHHHHHHHHHHHCCEEEECCCCCCEEEEEEECC DHVILSAVQPETVAHRLSTKEEVVVEDDE CCEEEEECCCHHHHHHCCCCCEEEEECCC >Mature Secondary Structure SIKLINIGFGNIVSANRLVAIVSPESAPIKRIIQEARDRGMLIDATYGRRTRAVIITDS EEEEEEECCCCEECCCEEEEEECCCCCHHHHHHHHHHHCCEEEECCCCCCEEEEEEECC DHVILSAVQPETVAHRLSTKEEVVVEDDE CCEEEEECCCHHHHHHCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA