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The map label for this gene is ywhC [H]

Identifier: 18310646

GI number: 18310646

Start: 1938718

End: 1939338

Strand: Reverse

Name: ywhC [H]

Synonym: CPE1664

Alternate gene names: 18310646

Gene position: 1939338-1938718 (Counterclockwise)

Preceding gene: 18310647

Following gene: 18310645

Centisome position: 63.97

GC content: 28.02

Gene sequence:

>621_bases
ATGCAATTTTTATTAGATGCGTTTCTTAGTATTCCAGCAATATTAATAGCTTTTTCAGTAAAAGAGTATACTCGTGCTAA
AATGGCAGATAAATTAGGAGATAAATCACCAAGGTTTAAAGGGGAATTAACCTTAGATCCATTAAAGCATGTTGATATAG
CTGGTGCCTTAATGATGGCTTTCTTTGGATTTGGTTGGAGTAAATCTGTAGAGATAAATAAATATGCATTTAAAAATCCA
AAGAAGGATGCTCTTAAAGTTAACATAGCTGCATGGCTTTCAAACTTAGTTGTTGCCATAATTGGAGTAATACTTACAAG
TTTATACTTAAGATTTTTTGGTTTAAGAGGAGATCTTTCTCAAATTATATTTTTAATGTTACAATATATAATAATATTAA
ATGTAAACTTCTTTGTATTTAATATATTACCACTTCCAGGACTTGACTGTTTTAGAATTTTAGAGGATCTTAAGCCTCAA
TTATTCTATAAGCTATCTGGAATAGTATATCAATATTATTACCCTATACTTATAGTTATAATACTTCTTGGAAGATATGT
ATTAGCTATACCATCTCAATTGGTTATGGCTTTTGTATATTCTATAGGTTTATTTATTTAA

Upstream 100 bases:

>100_bases
TGATATAAAAATTAAAATTAATAAATTATTAAGTTTACTGAATAATAAATTCAAGAAATTTATGGTATAATTTAAAATAC
AAAATAAGGAGGTCTTGATT

Downstream 100 bases:

>100_bases
TCATAATTTGAAATTTATAATACTTTAATTAGATTAGGTTTATAATTTGAAAATAACTCTTGATTTATAAGTTATTTTCA
AATTTAATATCTAATCTAAT

Product: peptidase, M50 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MQFLLDAFLSIPAILIAFSVKEYTRAKMADKLGDKSPRFKGELTLDPLKHVDIAGALMMAFFGFGWSKSVEINKYAFKNP
KKDALKVNIAAWLSNLVVAIIGVILTSLYLRFFGLRGDLSQIIFLMLQYIIILNVNFFVFNILPLPGLDCFRILEDLKPQ
LFYKLSGIVYQYYYPILIVIILLGRYVLAIPSQLVMAFVYSIGLFI

Sequences:

>Translated_206_residues
MQFLLDAFLSIPAILIAFSVKEYTRAKMADKLGDKSPRFKGELTLDPLKHVDIAGALMMAFFGFGWSKSVEINKYAFKNP
KKDALKVNIAAWLSNLVVAIIGVILTSLYLRFFGLRGDLSQIIFLMLQYIIILNVNFFVFNILPLPGLDCFRILEDLKPQ
LFYKLSGIVYQYYYPILIVIILLGRYVLAIPSQLVMAFVYSIGLFI
>Mature_206_residues
MQFLLDAFLSIPAILIAFSVKEYTRAKMADKLGDKSPRFKGELTLDPLKHVDIAGALMMAFFGFGWSKSVEINKYAFKNP
KKDALKVNIAAWLSNLVVAIIGVILTSLYLRFFGLRGDLSQIIFLMLQYIIILNVNFFVFNILPLPGLDCFRILEDLKPQ
LFYKLSGIVYQYYYPILIVIILLGRYVLAIPSQLVMAFVYSIGLFI

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 23438; Mature: 23438

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFLLDAFLSIPAILIAFSVKEYTRAKMADKLGDKSPRFKGELTLDPLKHVDIAGALMMA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHH
FFGFGWSKSVEINKYAFKNPKKDALKVNIAAWLSNLVVAIIGVILTSLYLRFFGLRGDLS
HHCCCCCCCCEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
QIIFLMLQYIIILNVNFFVFNILPLPGLDCFRILEDLKPQLFYKLSGIVYQYYYPILIVI
HHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILLGRYVLAIPSQLVMAFVYSIGLFI
HHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQFLLDAFLSIPAILIAFSVKEYTRAKMADKLGDKSPRFKGELTLDPLKHVDIAGALMMA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHH
FFGFGWSKSVEINKYAFKNPKKDALKVNIAAWLSNLVVAIIGVILTSLYLRFFGLRGDLS
HHCCCCCCCCEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
QIIFLMLQYIIILNVNFFVFNILPLPGLDCFRILEDLKPQLFYKLSGIVYQYYYPILIVI
HHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILLGRYVLAIPSQLVMAFVYSIGLFI
HHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]