| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
Click here to switch to the map view.
The map label for this gene is yybI [H]
Identifier: 18310604
GI number: 18310604
Start: 1891744
End: 1892739
Strand: Reverse
Name: yybI [H]
Synonym: CPE1622
Alternate gene names: 18310604
Gene position: 1892739-1891744 (Counterclockwise)
Preceding gene: 18310607
Following gene: 18310603
Centisome position: 62.44
GC content: 25.3
Gene sequence:
>996_bases ATGCTTGAGAATAATAATGAAAAAATAATAGATTATAAATTAGGAGACGTTACTGGTGATGGTATTAATGACGAAGTTTA TATTATGTCCTGTGCCTTTAATAAATGTTTAAATAGACATTGGTTACTTATTAAAGAGGGGAATTCAGGAAGGGTTGTAA GGTATGAATTAGAAGAAAATAATTATAATTTTGAAGTTCATTTAGAACCCTTTAGGGATCCAAATAAATTAGATATATTT ATAAGATCCATAGGTGATTGTTTTGGGGGATGTGTTAAGGGGCAAATTTTTACTTATGAGGGAGAGGAATTAAAGGAAAT ATTTAATACCAATGATTTCTATGAGAAAAATAAAGTAAGTGCTTTTTATAGAGATGATTATAAAGTTGAGGTACTTAACT ATGAAAGAAATAAAAAATATATTGTTGATATAAAAGAAAATTTTAAATATTATCTAGACTTTGTATATTCTGGAGATGGA AAAGTAAAAGAAGGAAAGGAGAAAGCAAATATAAGTAGTGTATGGGGATGTAATTCATATTATCCTATGGGAAGTGAAAT TGCTAATTTAAGTATTGTTCAAAAGGTTATTGGTCAAGCAGCTACGGATAATATAGGTCTAATTGAAAGTACATTAAAAT GGCAAGGTAATTCTTTTATTATAATTGATCAAACAGTAATTTTGAAAGGAAATCTCATAAATCAAAATAACAGAAGTAAA GAAATAAGTAATAAAAAAGATTTTTTAATTGGTACAAGAAATCTTTATGAAAATAACTGGAAAAGTTTAGCTGAATACTT TGATGATAATGTAAATTTTGATTCATTATCAATATATTGGTACTATTTAGCTGTGTTACAATTCTTTGCGAAAGATTTAA TTGAAGCTTTAAAATCAATAAATATGAATTTAAGTTTTCAATATCCCTATCCTTCAAAGGAAAAAGCTCTAATATTAAAA GAAAATATTGAATATAGTATTAGATTAAATAAATAA
Upstream 100 bases:
>100_bases TAAACTAAATTAATTTAAATTTCACTTGTTTTCAAATGAAAGTAACAGATAAGGAGATAGAAGATAAAATAATATTATAA CTATATAATTTGGAGTTAAT
Downstream 100 bases:
>100_bases TTAGTTTTTAAAGTAGCTTTCTTATATAAAATAGTGCTTAAAATGTTTTATACTAAATTTTATACAAGGTAAAGATAATA TAATAGTGTCATATTTAAGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 331; Mature: 331
Protein sequence:
>331_residues MLENNNEKIIDYKLGDVTGDGINDEVYIMSCAFNKCLNRHWLLIKEGNSGRVVRYELEENNYNFEVHLEPFRDPNKLDIF IRSIGDCFGGCVKGQIFTYEGEELKEIFNTNDFYEKNKVSAFYRDDYKVEVLNYERNKKYIVDIKENFKYYLDFVYSGDG KVKEGKEKANISSVWGCNSYYPMGSEIANLSIVQKVIGQAATDNIGLIESTLKWQGNSFIIIDQTVILKGNLINQNNRSK EISNKKDFLIGTRNLYENNWKSLAEYFDDNVNFDSLSIYWYYLAVLQFFAKDLIEALKSINMNLSFQYPYPSKEKALILK ENIEYSIRLNK
Sequences:
>Translated_331_residues MLENNNEKIIDYKLGDVTGDGINDEVYIMSCAFNKCLNRHWLLIKEGNSGRVVRYELEENNYNFEVHLEPFRDPNKLDIF IRSIGDCFGGCVKGQIFTYEGEELKEIFNTNDFYEKNKVSAFYRDDYKVEVLNYERNKKYIVDIKENFKYYLDFVYSGDG KVKEGKEKANISSVWGCNSYYPMGSEIANLSIVQKVIGQAATDNIGLIESTLKWQGNSFIIIDQTVILKGNLINQNNRSK EISNKKDFLIGTRNLYENNWKSLAEYFDDNVNFDSLSIYWYYLAVLQFFAKDLIEALKSINMNLSFQYPYPSKEKALILK ENIEYSIRLNK >Mature_331_residues MLENNNEKIIDYKLGDVTGDGINDEVYIMSCAFNKCLNRHWLLIKEGNSGRVVRYELEENNYNFEVHLEPFRDPNKLDIF IRSIGDCFGGCVKGQIFTYEGEELKEIFNTNDFYEKNKVSAFYRDDYKVEVLNYERNKKYIVDIKENFKYYLDFVYSGDG KVKEGKEKANISSVWGCNSYYPMGSEIANLSIVQKVIGQAATDNIGLIESTLKWQGNSFIIIDQTVILKGNLINQNNRSK EISNKKDFLIGTRNLYENNWKSLAEYFDDNVNFDSLSIYWYYLAVLQFFAKDLIEALKSINMNLSFQYPYPSKEKALILK ENIEYSIRLNK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38657; Mature: 38657
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLENNNEKIIDYKLGDVTGDGINDEVYIMSCAFNKCLNRHWLLIKEGNSGRVVRYELEEN CCCCCCCEEEEEEECCCCCCCCCCCEEEEEEHHHHHCCCEEEEEEECCCCCEEEEEEECC NYNFEVHLEPFRDPNKLDIFIRSIGDCFGGCVKGQIFTYEGEELKEIFNTNDFYEKNKVS CEEEEEEEECCCCCCCEEHHHHHHHHHHCCHHCCEEEEECCHHHHHHHCCCCCCCCCCCE AFYRDDYKVEVLNYERNKKYIVDIKENFKYYLDFVYSGDGKVKEGKEKANISSVWGCNSY EEEECCEEEEEEEECCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEECCCCCC YPMGSEIANLSIVQKVIGQAATDNIGLIESTLKWQGNSFIIIDQTVILKGNLINQNNRSK CCCCCHHHHHHHHHHHHCCCCCCCCCEEEHHHEECCCEEEEEEEEEEEECCEECCCCCCC EISNKKDFLIGTRNLYENNWKSLAEYFDDNVNFDSLSIYWYYLAVLQFFAKDLIEALKSI CCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC NMNLSFQYPYPSKEKALILKENIEYSIRLNK CCCEEEECCCCCCCCEEEEEECCEEEEEECC >Mature Secondary Structure MLENNNEKIIDYKLGDVTGDGINDEVYIMSCAFNKCLNRHWLLIKEGNSGRVVRYELEEN CCCCCCCEEEEEEECCCCCCCCCCCEEEEEEHHHHHCCCEEEEEEECCCCCEEEEEEECC NYNFEVHLEPFRDPNKLDIFIRSIGDCFGGCVKGQIFTYEGEELKEIFNTNDFYEKNKVS CEEEEEEEECCCCCCCEEHHHHHHHHHHCCHHCCEEEEECCHHHHHHHCCCCCCCCCCCE AFYRDDYKVEVLNYERNKKYIVDIKENFKYYLDFVYSGDGKVKEGKEKANISSVWGCNSY EEEECCEEEEEEEECCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEECCCCCC YPMGSEIANLSIVQKVIGQAATDNIGLIESTLKWQGNSFIIIDQTVILKGNLINQNNRSK CCCCCHHHHHHHHHHHHCCCCCCCCCEEEHHHEECCCEEEEEEEEEEEECCEECCCCCCC EISNKKDFLIGTRNLYENNWKSLAEYFDDNVNFDSLSIYWYYLAVLQFFAKDLIEALKSI CCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC NMNLSFQYPYPSKEKALILKENIEYSIRLNK CCCEEEECCCCCCCCEEEEEECCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377 [H]