Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

Click here to switch to the map view.

The map label for this gene is 18310599

Identifier: 18310599

GI number: 18310599

Start: 1886615

End: 1887010

Strand: Reverse

Name: 18310599

Synonym: CPE1617

Alternate gene names: NA

Gene position: 1887010-1886615 (Counterclockwise)

Preceding gene: 18310600

Following gene: 18310597

Centisome position: 62.25

GC content: 30.05

Gene sequence:

>396_bases
ATGGAGAAGTATAGAATAATAAATTTTTTATCTACTAATGGATTAACAGAAATAGAGGAAGTTTCTTCAGAAGAGAACAG
ATTAGCTCTTAAATTTTATTATGATTTTGAAGATGTAGAGATACAAGGTGCTAAAGCTTGTGCAAATGATGAAACAGACT
ATGAAGAAGATAGTAATCCATGGATTGTGGAAGGTGTTATTCCATATTTAGATGATATTGCAACAGATAGTGTTGAAGAG
ATTTTAGAAGAAGTTATGGAAGACTTTGAAATAATAGCTAAAGCTGAAGGATATGAAATAGAAGCTAGCAATTATTCAGG
AAAACAGTTCTTAGCTGTGTTCTTACCAGAGGATGAAGAACTAGAAATAGATGATATTTTAGATGAATTAAAATAG

Upstream 100 bases:

>100_bases
AAATGATTCAGTTGAATATAACTTAGTTGAAGATGATGAAGAATTTAGATTAGTAAAAAAAGAATATAAGAAGTTATTAT
ACTAAAAAGAGGTAAATATT

Downstream 100 bases:

>100_bases
TTTTTAGAATAGTTTTAAGTTTATACTTAACTAAAACTATCTTAATAGTAAAAACATTCTAAAAATTCAATGTTGCTTTT
TTTATATCTTGTGTTATAAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MEKYRIINFLSTNGLTEIEEVSSEENRLALKFYYDFEDVEIQGAKACANDETDYEEDSNPWIVEGVIPYLDDIATDSVEE
ILEEVMEDFEIIAKAEGYEIEASNYSGKQFLAVFLPEDEELEIDDILDELK

Sequences:

>Translated_131_residues
MEKYRIINFLSTNGLTEIEEVSSEENRLALKFYYDFEDVEIQGAKACANDETDYEEDSNPWIVEGVIPYLDDIATDSVEE
ILEEVMEDFEIIAKAEGYEIEASNYSGKQFLAVFLPEDEELEIDDILDELK
>Mature_131_residues
MEKYRIINFLSTNGLTEIEEVSSEENRLALKFYYDFEDVEIQGAKACANDETDYEEDSNPWIVEGVIPYLDDIATDSVEE
ILEEVMEDFEIIAKAEGYEIEASNYSGKQFLAVFLPEDEELEIDDILDELK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15111; Mature: 15111

Theoretical pI: Translated: 3.48; Mature: 3.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKYRIINFLSTNGLTEIEEVSSEENRLALKFYYDFEDVEIQGAKACANDETDYEEDSNP
CCCEEEEEEECCCCCCHHHHHCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCC
WIVEGVIPYLDDIATDSVEEILEEVMEDFEIIAKAEGYEIEASNYSGKQFLAVFLPEDEE
EEEECHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEEEECCCCCC
LEIDDILDELK
CCHHHHHHHCC
>Mature Secondary Structure
MEKYRIINFLSTNGLTEIEEVSSEENRLALKFYYDFEDVEIQGAKACANDETDYEEDSNP
CCCEEEEEEECCCCCCHHHHHCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCC
WIVEGVIPYLDDIATDSVEEILEEVMEDFEIIAKAEGYEIEASNYSGKQFLAVFLPEDEE
EEEECHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEEEECCCCCC
LEIDDILDELK
CCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA