| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310566
Identifier: 18310566
GI number: 18310566
Start: 1856632
End: 1857189
Strand: Reverse
Name: 18310566
Synonym: CPE1584
Alternate gene names: NA
Gene position: 1857189-1856632 (Counterclockwise)
Preceding gene: 18310568
Following gene: 18310565
Centisome position: 61.26
GC content: 29.57
Gene sequence:
>558_bases ATGAAAAAAAACAAACTATCAATTAAAACAATTGTAGCTATAGGAATTGGCTCAGCAGTTTTTATGATATTAGGTAGATT TGGTTCTTTGCCTACAGGAATTCCTAATACAAACATAGAAACAGCATATGCGTTTTTAGCTTTAATGGCATTGTTATATG GTCCTTTAGCTGGTTTTTTAATAGGATTCATAGGACATGCTTTAAAAGATATAGTATTCTTTGGATCACCTTGGATAAGT TGGGTTTTTGCTTCAGGTATAGTAGGATTAATAATTGGATTTGGAGCTAGATTTATAAAAATTAATCAAGGAGTATTTAA GTTAAAGCAAATATTTATGTTTAATTTAATACAGATAATTGCCAATGGAGTGGCTTGGTTTTTAGTAGCACCAACTTTAG ATATATTAATTTACTCTGAACCTGCAAATAAGGTTTATCTACAAGGGGTAATTGGTGGAATTTCTAATATGGTTACTGTT GGAGTTTTAGGAACTATTTTAATAGCTAATTATGCTAAGACAAGAATACAAAAAGGTAGCTTAAGAAAAGAATATTAG
Upstream 100 bases:
>100_bases TAATCTTTATAGTTAACTGTGTGAAATTATGTTTATAATTATAGATATTAAAAGGTATTTTATTATCTAAAGATAGATTT TTCTAAAATGGAGATGAACA
Downstream 100 bases:
>100_bases AAGTATATGAGGTTGTGGGAAAGATATTTTCAGACAACCTTTTTTTGAAGTTTAATTTAGGAGATGTATAAAACTTAAAT ATAGAGTTAAAAAATAATAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 185; Mature: 185
Protein sequence:
>185_residues MKKNKLSIKTIVAIGIGSAVFMILGRFGSLPTGIPNTNIETAYAFLALMALLYGPLAGFLIGFIGHALKDIVFFGSPWIS WVFASGIVGLIIGFGARFIKINQGVFKLKQIFMFNLIQIIANGVAWFLVAPTLDILIYSEPANKVYLQGVIGGISNMVTV GVLGTILIANYAKTRIQKGSLRKEY
Sequences:
>Translated_185_residues MKKNKLSIKTIVAIGIGSAVFMILGRFGSLPTGIPNTNIETAYAFLALMALLYGPLAGFLIGFIGHALKDIVFFGSPWIS WVFASGIVGLIIGFGARFIKINQGVFKLKQIFMFNLIQIIANGVAWFLVAPTLDILIYSEPANKVYLQGVIGGISNMVTV GVLGTILIANYAKTRIQKGSLRKEY >Mature_185_residues MKKNKLSIKTIVAIGIGSAVFMILGRFGSLPTGIPNTNIETAYAFLALMALLYGPLAGFLIGFIGHALKDIVFFGSPWIS WVFASGIVGLIIGFGARFIKINQGVFKLKQIFMFNLIQIIANGVAWFLVAPTLDILIYSEPANKVYLQGVIGGISNMVTV GVLGTILIANYAKTRIQKGSLRKEY
Specific function: Unknown
COG id: COG4720
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0397 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009825 - InterPro: IPR022914 [H]
Pfam domain/function: PF07155 DUF1393 [H]
EC number: NA
Molecular weight: Translated: 20032; Mature: 20032
Theoretical pI: Translated: 10.68; Mature: 10.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKNKLSIKTIVAIGIGSAVFMILGRFGSLPTGIPNTNIETAYAFLALMALLYGPLAGFL CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH IGFIGHALKDIVFFGSPWISWVFASGIVGLIIGFGARFIKINQGVFKLKQIFMFNLIQII HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHEEEECHHHHHHHHHHHHHHHHHH ANGVAWFLVAPTLDILIYSEPANKVYLQGVIGGISNMVTVGVLGTILIANYAKTRIQKGS HHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LRKEY CCCCC >Mature Secondary Structure MKKNKLSIKTIVAIGIGSAVFMILGRFGSLPTGIPNTNIETAYAFLALMALLYGPLAGFL CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH IGFIGHALKDIVFFGSPWISWVFASGIVGLIIGFGARFIKINQGVFKLKQIFMFNLIQII HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHEEEECHHHHHHHHHHHHHHHHHH ANGVAWFLVAPTLDILIYSEPANKVYLQGVIGGISNMVTVGVLGTILIANYAKTRIQKGS HHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LRKEY CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA