| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310305
Identifier: 18310305
GI number: 18310305
Start: 1564655
End: 1565926
Strand: Reverse
Name: 18310305
Synonym: CPE1323
Alternate gene names: NA
Gene position: 1565926-1564655 (Counterclockwise)
Preceding gene: 18310309
Following gene: 18310304
Centisome position: 51.66
GC content: 27.67
Gene sequence:
>1272_bases ATGAACAAATTAACAATGTTTTTATACAGTAACATAATCAATAAGAAAATATATGATGAATTCAATGAAGTCCTAGGAGT TTTAAAGGATGTTTATGTAACTACAGAGGATGGTTATCCAAGAATTATAGGATATAAAGTAAAGAGAGATGGAGTCATAT TTGATTATGAGTTTAAAAATATAGATTTTTATCAAAAAGATAATGGGAAATTTAAAATACAAATAAGGGGGAGTAGAGAG ATATTACCTAGAAATTATAGCTATCTTTTATCTCAAAATTTATTAGATAGAAAAATAGTAGATATAAATGGAAAAAAAGT AGTTAAGGTTGATGATTTAAGAATAGTAAAAATAGCAGGTGAGTTTAGGGTAATAGCTGTTGAAACTGGAAAGATAGTAA AGTTTAGACGTAATGGATTAGAGGGATTAGGAAAATTATTAGCTAAAGTTTTTAAAGAAAAGTTTCAAGAAAAAGTTATT ATGTGGGAAGATGTTGAGTCTTTAGAAATGATTAATGATAACTTAAAGTTAGCTATTCCATATAAAAAGCTTCAAAAATT ACATCCAGCTGACTTAGCAGATATACTTGAAGAACTTGATGCCATAAACAGAAAAAAAGTTTTCGATAGCTTAGATGAAG ATTTAGCTGCAGATACCTTAGAAGAAATAGAACCAGAAGTACAAAGTAGTATAATAAAGGGACTTTCCCATTCTAAAACT GCAGAGCTTTTTGAAAATATTCCAAATGACGAAATAGCAGACATTATAGATGAACTAGATGAGGAAGAAAGAGAAAAAGT ATTAATTGCCTTAGAAAATGAAGACGCAGAAGAAGTTAAAGAGCTTATGGGATATTCAGATGAATCTGTAGGTAGTATAA TGAACAAGGATTTTATATCTTTTAATTTAGATCTTACTGTAAAAGAGACTATAGAACTTTTAAGAGAATTAGATGCAGAT GAAGAAGTTATGTACTATGTTTATATAACTGATGAAGAAGATAGATTAAATGGAGTTGTAACTTTAAGAGATTTAATAAT GAATGAAGAAAATAAGAGACTTAAGGAAATTATGCACACATCTTCCATAAGTGTTAATATAGATAGTACTATAGAGGATG CCATAGAAAAATCAACAAAGTATGATTTAATATCTATTCCTGTTGTGGACTATGAAGAAAAATTAGTTGGTATGGTTCTT ATTCACGATATAGTTGATGAATTAATTCCTAACAACTTAAAAAGAAAATTTAAGAAAAAGTACACAGATTAG
Upstream 100 bases:
>100_bases TATTTTCTAGATTAGATTAAACTTATAATATACTTCTCCTTTTCTTAAAAATGAAATTTAATTTTAAAATTTTTTTAAAA TTAAAAAGGAGGAGAGCTGG
Downstream 100 bases:
>100_bases TTGACAAATTTTAATAAAAGAATATAATAAAGTATATAATTCGTATCAAAATAGTCGGATAAATGTTGTGATAAAGTAAA GTATTATAAGGATAGGTCAC
Product: CBS domain/MgtE intracellular domain protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 423; Mature: 423
Protein sequence:
>423_residues MNKLTMFLYSNIINKKIYDEFNEVLGVLKDVYVTTEDGYPRIIGYKVKRDGVIFDYEFKNIDFYQKDNGKFKIQIRGSRE ILPRNYSYLLSQNLLDRKIVDINGKKVVKVDDLRIVKIAGEFRVIAVETGKIVKFRRNGLEGLGKLLAKVFKEKFQEKVI MWEDVESLEMINDNLKLAIPYKKLQKLHPADLADILEELDAINRKKVFDSLDEDLAADTLEEIEPEVQSSIIKGLSHSKT AELFENIPNDEIADIIDELDEEEREKVLIALENEDAEEVKELMGYSDESVGSIMNKDFISFNLDLTVKETIELLRELDAD EEVMYYVYITDEEDRLNGVVTLRDLIMNEENKRLKEIMHTSSISVNIDSTIEDAIEKSTKYDLISIPVVDYEEKLVGMVL IHDIVDELIPNNLKRKFKKKYTD
Sequences:
>Translated_423_residues MNKLTMFLYSNIINKKIYDEFNEVLGVLKDVYVTTEDGYPRIIGYKVKRDGVIFDYEFKNIDFYQKDNGKFKIQIRGSRE ILPRNYSYLLSQNLLDRKIVDINGKKVVKVDDLRIVKIAGEFRVIAVETGKIVKFRRNGLEGLGKLLAKVFKEKFQEKVI MWEDVESLEMINDNLKLAIPYKKLQKLHPADLADILEELDAINRKKVFDSLDEDLAADTLEEIEPEVQSSIIKGLSHSKT AELFENIPNDEIADIIDELDEEEREKVLIALENEDAEEVKELMGYSDESVGSIMNKDFISFNLDLTVKETIELLRELDAD EEVMYYVYITDEEDRLNGVVTLRDLIMNEENKRLKEIMHTSSISVNIDSTIEDAIEKSTKYDLISIPVVDYEEKLVGMVL IHDIVDELIPNNLKRKFKKKYTD >Mature_423_residues MNKLTMFLYSNIINKKIYDEFNEVLGVLKDVYVTTEDGYPRIIGYKVKRDGVIFDYEFKNIDFYQKDNGKFKIQIRGSRE ILPRNYSYLLSQNLLDRKIVDINGKKVVKVDDLRIVKIAGEFRVIAVETGKIVKFRRNGLEGLGKLLAKVFKEKFQEKVI MWEDVESLEMINDNLKLAIPYKKLQKLHPADLADILEELDAINRKKVFDSLDEDLAADTLEEIEPEVQSSIIKGLSHSKT AELFENIPNDEIADIIDELDEEEREKVLIALENEDAEEVKELMGYSDESVGSIMNKDFISFNLDLTVKETIELLRELDAD EEVMYYVYITDEEDRLNGVVTLRDLIMNEENKRLKEIMHTSSISVNIDSTIEDAIEKSTKYDLISIPVVDYEEKLVGMVL IHDIVDELIPNNLKRKFKKKYTD
Specific function: Acts as a magnesium transporter [H]
COG id: COG2239
COG function: function code P; Mg/Co/Ni transporter MgtE (contains CBS domain)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 CBS domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR000644 - InterPro: IPR006668 - InterPro: IPR006667 - InterPro: IPR006669 [H]
Pfam domain/function: PF00571 CBS; PF01769 MgtE; PF03448 MgtE_N [H]
EC number: NA
Molecular weight: Translated: 49092; Mature: 49092
Theoretical pI: Translated: 4.45; Mature: 4.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKLTMFLYSNIINKKIYDEFNEVLGVLKDVYVTTEDGYPRIIGYKVKRDGVIFDYEFKN CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEEEECCCEEEEEEECC IDFYQKDNGKFKIQIRGSREILPRNYSYLLSQNLLDRKIVDINGKKVVKVDDLRIVKIAG CEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCEEEECCCCEEEEECCEEEEEEEC EFRVIAVETGKIVKFRRNGLEGLGKLLAKVFKEKFQEKVIMWEDVESLEMINDNLKLAIP CEEEEEEECCCEEHHHHCCHHHHHHHHHHHHHHHHHHCEEECCCHHHHHHHCCCCEEEEC YKKLQKLHPADLADILEELDAINRKKVFDSLDEDLAADTLEEIEPEVQSSIIKGLSHSKT HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCHH AELFENIPNDEIADIIDELDEEEREKVLIALENEDAEEVKELMGYSDESVGSIMNKDFIS HHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCHHHHHHHCCCCEE FNLDLTVKETIELLRELDADEEVMYYVYITDEEDRLNGVVTLRDLIMNEENKRLKEIMHT EEEEEEHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHH SSISVNIDSTIEDAIEKSTKYDLISIPVVDYEEKLVGMVLIHDIVDELIPNNLKRKFKKK CCEEEEECHHHHHHHHHCCCCEEEEECEECHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH YTD CCC >Mature Secondary Structure MNKLTMFLYSNIINKKIYDEFNEVLGVLKDVYVTTEDGYPRIIGYKVKRDGVIFDYEFKN CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEEEECCCEEEEEEECC IDFYQKDNGKFKIQIRGSREILPRNYSYLLSQNLLDRKIVDINGKKVVKVDDLRIVKIAG CEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCEEEECCCCEEEEECCEEEEEEEC EFRVIAVETGKIVKFRRNGLEGLGKLLAKVFKEKFQEKVIMWEDVESLEMINDNLKLAIP CEEEEEEECCCEEHHHHCCHHHHHHHHHHHHHHHHHHCEEECCCHHHHHHHCCCCEEEEC YKKLQKLHPADLADILEELDAINRKKVFDSLDEDLAADTLEEIEPEVQSSIIKGLSHSKT HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCHH AELFENIPNDEIADIIDELDEEEREKVLIALENEDAEEVKELMGYSDESVGSIMNKDFIS HHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCHHHHHHHCCCCEE FNLDLTVKETIELLRELDADEEVMYYVYITDEEDRLNGVVTLRDLIMNEENKRLKEIMHT EEEEEEHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHH SSISVNIDSTIEDAIEKSTKYDLISIPVVDYEEKLVGMVLIHDIVDELIPNNLKRKFKKK CCEEEEECHHHHHHHHHCCCCEEEEECEECHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH YTD CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA