| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310242
Identifier: 18310242
GI number: 18310242
Start: 1471730
End: 1472500
Strand: Reverse
Name: 18310242
Synonym: CPE1260
Alternate gene names: NA
Gene position: 1472500-1471730 (Counterclockwise)
Preceding gene: 18310243
Following gene: 18310241
Centisome position: 48.57
GC content: 31.0
Gene sequence:
>771_bases ATGTCAAAGATGAAAAAATGTAAAGTTTGCTCTAAAGAAATAGCATCTAATGCTAAAACTTGTCCTGAATGTGGGGCGAA AAATAAAAAAGCAATATATAAAAGACCATGGTTTATAATATTAGCAATAATTATAATAATTGGAGCTGTAGGAGGATCAA GTTATGAGGATTCAACAGTGGCTAACAATGAAACTATAAGTGAAGTTGAGCAAAATCAAGATAAAGAAATTAGTAATAAT CAGGGTGAAGAAAAAGATGTTTTGGTTAAAGAGAATGAAGAAAAAGTAGAGGAAAAAGAAGAAAAGGTAGAAGAGGAAGT TCCAAAAGAATATAAGTCTGCATTAAGAAAAGCAAAGGTATATAGTGATACTATGAATATGTCTAAAGAGGGATTATATG ATCAATTGACATCTGAGTATGGAGAGAAATTTTCTGATGAAGCAGCTCAATATGCTATGGATAATTTAGAAGCAGATTGG AATAAAAATGCCTTGAAAAAAGCAAAGACATATAGCGATACTATGAGTATGTCTAAAGCAGGCTTATATGACCAATTAAC ATCTGAATACGGAGAGAAATTTACAGCAGAAGAGGCTCAATATGCTGTAGATAATTTAGATGTAAATTGGAAAGAAAATG CATTAAAAAAAGCAAAAGTATATCAAGAGACTATGGCAATGTCTCCAAGTGCAATATATGATCAATTAGTTTCAGAATAC GGAGAAAAATTTACAGAAGAGGAAGCTCAGTATGCTGTAGATAATTTATAG
Upstream 100 bases:
>100_bases GTTGATTTATTTTGGTTTATATGTAAATATATAGTAACAAAAGTTTTTAACATGAATATTTTATTATTTATAAACATCTA ATTTAAAGGGGAAATTTGAA
Downstream 100 bases:
>100_bases TAGTACATTTAAAAGATATGATTTAGTTTTAAATAAAGATTTTGGGATTTAATACAAGAGATATAGAAATTTTCTATATC TCTTAATTTTTTAGCTATTT
Product: hypothetical protein
Products: NA
Alternate protein names: Phage Super Infection Exclusion; Phage Super Infection Exclusion Protein; Surface Protein A; Prophage Superinfection Immunity Protein; Secreted Protein
Number of amino acids: Translated: 256; Mature: 255
Protein sequence:
>256_residues MSKMKKCKVCSKEIASNAKTCPECGAKNKKAIYKRPWFIILAIIIIIGAVGGSSYEDSTVANNETISEVEQNQDKEISNN QGEEKDVLVKENEEKVEEKEEKVEEEVPKEYKSALRKAKVYSDTMNMSKEGLYDQLTSEYGEKFSDEAAQYAMDNLEADW NKNALKKAKTYSDTMSMSKAGLYDQLTSEYGEKFTAEEAQYAVDNLDVNWKENALKKAKVYQETMAMSPSAIYDQLVSEY GEKFTEEEAQYAVDNL
Sequences:
>Translated_256_residues MSKMKKCKVCSKEIASNAKTCPECGAKNKKAIYKRPWFIILAIIIIIGAVGGSSYEDSTVANNETISEVEQNQDKEISNN QGEEKDVLVKENEEKVEEKEEKVEEEVPKEYKSALRKAKVYSDTMNMSKEGLYDQLTSEYGEKFSDEAAQYAMDNLEADW NKNALKKAKTYSDTMSMSKAGLYDQLTSEYGEKFTAEEAQYAVDNLDVNWKENALKKAKVYQETMAMSPSAIYDQLVSEY GEKFTEEEAQYAVDNL >Mature_255_residues SKMKKCKVCSKEIASNAKTCPECGAKNKKAIYKRPWFIILAIIIIIGAVGGSSYEDSTVANNETISEVEQNQDKEISNNQ GEEKDVLVKENEEKVEEKEEKVEEEVPKEYKSALRKAKVYSDTMNMSKEGLYDQLTSEYGEKFSDEAAQYAMDNLEADWN KNALKKAKTYSDTMSMSKAGLYDQLTSEYGEKFTAEEAQYAVDNLDVNWKENALKKAKVYQETMAMSPSAIYDQLVSEYG EKFTEEEAQYAVDNL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29021; Mature: 28889
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKMKKCKVCSKEIASNAKTCPECGAKNKKAIYKRPWFIILAIIIIIGAVGGSSYEDSTV CCCHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHCHHHHHHHHHHHHHHCCCCCCCCCHH ANNETISEVEQNQDKEISNNQGEEKDVLVKENEEKVEEKEEKVEEEVPKEYKSALRKAKV CCCHHHHHHHHCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH YSDTMNMSKEGLYDQLTSEYGEKFSDEAAQYAMDNLEADWNKNALKKAKTYSDTMSMSKA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH GLYDQLTSEYGEKFTAEEAQYAVDNLDVNWKENALKKAKVYQETMAMSPSAIYDQLVSEY HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH GEKFTEEEAQYAVDNL HHHHHHHHHHHHHCCC >Mature Secondary Structure SKMKKCKVCSKEIASNAKTCPECGAKNKKAIYKRPWFIILAIIIIIGAVGGSSYEDSTV CCHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHCHHHHHHHHHHHHHHCCCCCCCCCHH ANNETISEVEQNQDKEISNNQGEEKDVLVKENEEKVEEKEEKVEEEVPKEYKSALRKAKV CCCHHHHHHHHCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH YSDTMNMSKEGLYDQLTSEYGEKFSDEAAQYAMDNLEADWNKNALKKAKTYSDTMSMSKA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH GLYDQLTSEYGEKFTAEEAQYAVDNLDVNWKENALKKAKVYQETMAMSPSAIYDQLVSEY HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH GEKFTEEEAQYAVDNL HHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA