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The map label for this gene is deoR [H]

Identifier: 18310126

GI number: 18310126

Start: 1338112

End: 1339077

Strand: Reverse

Name: deoR [H]

Synonym: CPE1144

Alternate gene names: 18310126

Gene position: 1339077-1338112 (Counterclockwise)

Preceding gene: 18310127

Following gene: 18310121

Centisome position: 44.17

GC content: 28.16

Gene sequence:

>966_bases
ATGAAATTTGAAGTAAATTTTGAAGATCAATATAATGAATTTTTAGCTAATATATCAAATATGTATTATAACGAAAATAA
AACTCAGTCAGAAATTGCCAAAGAGTTTAATACCACTCGTTTTAAAGTAGCTAAATACTTACAAGAAGCTCGTGATAAAA
ATATAGTAAATATAGAAATAAATCATCCAGAAATAAGATTGTCCTCTCTTGAAAAAAAATTTAAAGAACAATTTGGTCTA
AAAGAAGCTATAATCTTAAAGGTTAACAATAATGATGCATCAGAATATGCTCAAACTCTAGGTAAAACAGCAGCTGATTA
TATTCAAACAATACTTAATGATGATAGTATTGTAGGTCTTACCTGGGGAAAAACGCTATACCATTCAATAAAGAATATAA
AGGCTTCAAAAAAACTACCAATAACAGTTGTTCAGCCCTTCGGTACATCTGGAAAGGGAAATATAAGTGTAGATACTCCA
AGTTTAGTACATTTATTATCAGATAAATACGATTCAAATTATAGACTCTTATATGCTCCACTTTACATAATGGATGACAT
GGTAAGAAAAAATTTATCAATGGAATTAGTTATAAATCAATCTTTATTAAAGGCTAAAGAAATGGATATTCTCTTAACTG
GATTAGGAACTCCTGAAGCAATATACTCTACACTTTTATGGAAAGAATCATTCTTACAAGATGAATTTATAAAACATCAA
GCTGTTGGAGCTATATATGGGCGTCTTTACGATAAAGAAGGAAATTTCTTAGACACAAGTTTAAACAACAAGGTTTTTGG
AATTGATTCAGATACAATAAAAGCCATAGAAAATAAGGTTTGTATAGTCACTGGTAAATTTAAATCTGTAGCTATTTTAG
GAGCCTTAAGAGGAAAACTAATAAATACTTTAATTACTGATGAATTAACTGCAACAAAAGTACTACATCTAAGTAGTATT
GAATAA

Upstream 100 bases:

>100_bases
ATTGGCAATAACTGTGTTTTTAGATGGAATAAAAAAATATTTTCCTTTATAATTAAATTAGCATTAACTTATAAATAATC
TAAAACAGAGGTATGACAAT

Downstream 100 bases:

>100_bases
TAAAGCACACTTAATACTATAAAAGTTACTATCATAGTATTAAAAATTTTAGAGGAGATAGCTTTATTTTTCACACTAAA
CTATCTCCTCTTTAAAATTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MKFEVNFEDQYNEFLANISNMYYNENKTQSEIAKEFNTTRFKVAKYLQEARDKNIVNIEINHPEIRLSSLEKKFKEQFGL
KEAIILKVNNNDASEYAQTLGKTAADYIQTILNDDSIVGLTWGKTLYHSIKNIKASKKLPITVVQPFGTSGKGNISVDTP
SLVHLLSDKYDSNYRLLYAPLYIMDDMVRKNLSMELVINQSLLKAKEMDILLTGLGTPEAIYSTLLWKESFLQDEFIKHQ
AVGAIYGRLYDKEGNFLDTSLNNKVFGIDSDTIKAIENKVCIVTGKFKSVAILGALRGKLINTLITDELTATKVLHLSSI
E

Sequences:

>Translated_321_residues
MKFEVNFEDQYNEFLANISNMYYNENKTQSEIAKEFNTTRFKVAKYLQEARDKNIVNIEINHPEIRLSSLEKKFKEQFGL
KEAIILKVNNNDASEYAQTLGKTAADYIQTILNDDSIVGLTWGKTLYHSIKNIKASKKLPITVVQPFGTSGKGNISVDTP
SLVHLLSDKYDSNYRLLYAPLYIMDDMVRKNLSMELVINQSLLKAKEMDILLTGLGTPEAIYSTLLWKESFLQDEFIKHQ
AVGAIYGRLYDKEGNFLDTSLNNKVFGIDSDTIKAIENKVCIVTGKFKSVAILGALRGKLINTLITDELTATKVLHLSSI
E
>Mature_321_residues
MKFEVNFEDQYNEFLANISNMYYNENKTQSEIAKEFNTTRFKVAKYLQEARDKNIVNIEINHPEIRLSSLEKKFKEQFGL
KEAIILKVNNNDASEYAQTLGKTAADYIQTILNDDSIVGLTWGKTLYHSIKNIKASKKLPITVVQPFGTSGKGNISVDTP
SLVHLLSDKYDSNYRLLYAPLYIMDDMVRKNLSMELVINQSLLKAKEMDILLTGLGTPEAIYSTLLWKESFLQDEFIKHQ
AVGAIYGRLYDKEGNFLDTSLNNKVFGIDSDTIKAIENKVCIVTGKFKSVAILGALRGKLINTLITDELTATKVLHLSSI
E

Specific function: Negative regulator of the dra-nupC-pdp operon. DeoR binds cooperatively to the operator DNA, which consists of a palindrome and a direct repeat sequence located 3' to the palindrome [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI87082414, Length=322, Percent_Identity=25.1552795031056, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1787791, Length=312, Percent_Identity=23.3974358974359, Blast_Score=93, Evalue=2e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 36330; Mature: 36330

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFEVNFEDQYNEFLANISNMYYNENKTQSEIAKEFNTTRFKVAKYLQEARDKNIVNIEI
CEEEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEE
NHPEIRLSSLEKKFKEQFGLKEAIILKVNNNDASEYAQTLGKTAADYIQTILNDDSIVGL
CCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
TWGKTLYHSIKNIKASKKLPITVVQPFGTSGKGNISVDTPSLVHLLSDKYDSNYRLLYAP
ECHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHCCCCCCEEEEEH
LYIMDDMVRKNLSMELVINQSLLKAKEMDILLTGLGTPEAIYSTLLWKESFLQDEFIKHQ
HHHHHHHHHCCCCEEEEECHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
AVGAIYGRLYDKEGNFLDTSLNNKVFGIDSDTIKAIENKVCIVTGKFKSVAILGALRGKL
HHHHHHHHEECCCCCEEECCCCCEEEECCHHHHHHHCCCEEEEECCCHHHHHHHHHHHHH
INTLITDELTATKVLHLSSIE
HHHHHHCCHHHHHEEEECCCC
>Mature Secondary Structure
MKFEVNFEDQYNEFLANISNMYYNENKTQSEIAKEFNTTRFKVAKYLQEARDKNIVNIEI
CEEEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEE
NHPEIRLSSLEKKFKEQFGLKEAIILKVNNNDASEYAQTLGKTAADYIQTILNDDSIVGL
CCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
TWGKTLYHSIKNIKASKKLPITVVQPFGTSGKGNISVDTPSLVHLLSDKYDSNYRLLYAP
ECHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHCCCCCCEEEEEH
LYIMDDMVRKNLSMELVINQSLLKAKEMDILLTGLGTPEAIYSTLLWKESFLQDEFIKHQ
HHHHHHHHHCCCCEEEEECHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
AVGAIYGRLYDKEGNFLDTSLNNKVFGIDSDTIKAIENKVCIVTGKFKSVAILGALRGKL
HHHHHHHHEECCCCCEEECCCCCEEEECCHHHHHHHCCCEEEEECCCHHHHHHHHHHHHH
INTLITDELTATKVLHLSSIE
HHHHHHCCHHHHHEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8550462; 8867804; 9384377; 10074062; 10714997 [H]